Browse Element(s) Details


OsAffx.4084.1.S1_at

Description tigr:9632.m04246
TID=OsAffx.4084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glucosyl transferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4425011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44230OsAffx.26455.1.S1_at11/114+25980070..25984574Cytokinin dehydrogenase 5 precursor, putative
LOC_Os04g44240Os.5250.1.S1_at11/114+25986970..25988687Cytokinin-O-glucosyltransferase 3, putative, expressed
LOC_Os04g44250OsAffx.4084.1.S1_at11/114+25994621..25996321UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44260OsAffx.26456.1.S1_at11/114+25999104..25999649Thioredoxin reductase 1, putative
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4084.1.S1_at--573--4011Chr04:25995176..25995200 (25 bp)
CGTCGGCGGCTTCATGACACACTGT
LOC_Os04g44250
OsAffx.4084.1.S1_at--868--591Chr04:25995115..25995139 (25 bp)
ATGCCCATGGTCACCTGGCCATTCT
LOC_Os04g44250
OsAffx.4084.1.S1_at--556--3591Chr04:25995096..25995120 (25 bp)
CATTCTTCGCCGAGCAGTTCATCAA
LOC_Os04g44250
OsAffx.4084.1.S1_at--701--9711Chr04:25995075..25995099 (25 bp)
TCAACGAGCGGCTGATCGTGGACGT
LOC_Os04g44250
OsAffx.4084.1.S1_at--399--4051Chr04:25995021..25995045 (25 bp)
CGAGGCCGACGGAGAACGTTCTGAC
LOC_Os04g44250
OsAffx.4084.1.S1_at--1113--4011Chr04:25995005..25995029 (25 bp)
CGTTCTGACGGCTGGTAAGCTCGGA
LOC_Os04g44250
OsAffx.4084.1.S1_at--156--5611Chr04:25994822..25994846 (25 bp)
GAAATTGATCCATTCTTCCGTTTGA
LOC_Os04g44250
OsAffx.4084.1.S1_at--1126--6511Chr04:25994792..25994816 (25 bp)
GATTTGTTCGTGATACTCAATTGGT
LOC_Os04g44250
OsAffx.4084.1.S1_at--700--2011Chr04:25994778..25994802 (25 bp)
ACTCAATTGGTTCCTTGTTACTGCA
LOC_Os04g44250
OsAffx.4084.1.S1_at--880--5231Chr04:25994727..25994751 (25 bp)
GAATAATCATGGTTCTACTTCTTTA
LOC_Os04g44250
OsAffx.4084.1.S1_at--1064--5231Chr04:25994687..25994711 (25 bp)
GAATAACTAGCTGATTTTCGTGTTT
LOC_Os04g44250
Target Sequence 
CGTCGGCGGCTTCATGACACACTGTGGGTGGGGGTCGACTCTGGAGAGCGTCGCCGCCGGCATGCCCATGGTCACCTGGC
CATTCTTCGCCGAGCAGTTCATCAACGAGCGGCTGATCGTGGACGTGCTCGGCATCGGGGTGTCCGTCGGCGTGACGAGG
CCGACGGAGAACGTTCTGACGGCTGGTAAGCTCGGAGGCGCCGAGGCGAAGGTGGAGATCGGGGCCGATCAGGTGAAGAA
GGCATTGGCGAGGCTGATGGATGAAGGGGAAGACATGAGAAGGAAGGTTCACGAGCTCAAGGAGAAAGCAAGGGCTGCTC
TGGAGGAAGGTGGATCGTCGTATATGAATTTGGAGAAATTGATCCATTCTTCCGTTTGAATTTCGATTTGTTCGTGATAC
TCAATTGGTTCCTTGTTACTGCATAATATAGTTGGTTTTATTCAGATGAGAATAATCATGGTTCTACTTCTTTAGAACAT
ATAGAAAAAGAATAACTAGCTGATTTTCGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis