Browse Element(s) Details


Os.52532.1.S1_x_at

Description gb:AK067759.1
DB_XREF= gi:32977777
TID=Os.52532.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119C20, full insert sequence.
FL= gb:AK067759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3434010/11expressed protein
LOC_Os12g118305/11expressed protein
LOC_Os03g640101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34310NANA9+20251801..20254012expressed protein
LOC_Os09g34320Os.5209.2.S1_at10/119+20257935..20259483expressed protein
LOC_Os09g34330NANA9+20268382..20269236Helix-loop-helix DNA-binding domain containing protein
LOC_Os09g34340Os.52532.1.S1_x_at10/119+20273188..20273980expressed protein
LOC_Os09g34340Os.51320.1.S1_x_at5/119+20273188..20273980expressed protein
LOC_Os09g34340Os.54448.1.S1_x_at3/119+20273188..20273980expressed protein
LOC_Os09g34846NANA9+20283087..20283313NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52532.1.S1_x_at--217--6131Chr09:20273811..20273835 (25 bp)
GAGGGAATCGATGACTTCTTCCCCT
LOC_Os09g34340
Os.52532.1.S1_x_at--450--3952Chr12:6425039..6425063 (25 bp)
CGGATCCTCCACCGGTGACTGGATC
LOC_Os12g11830
Os.52532.1.S1_x_at--384--9315Chr05:6716063..6716083 (21 bp)
TCCCTCCACTACTTCCGATGGGTGG
NONE
Os.52532.1.S1_x_at--958--2016Chr03:36114002..36114026 (25 bp)
ACTACTTCCGATGGGTGGATCCGGC
NONE
Os.52532.1.S1_x_at--799--4293Chr03:36114097..36114121 (25 bp)
CCTCTCTTCTGCCTTCGGTGGCGGT
NONE
Os.52532.1.S1_x_at--1068--3451NONE
CAGTGTGTGGCAGCGGCGAGTGGAT
NONE
Os.52532.1.S1_x_at--898--6354Chr03:36114136..36114277 (25 bp)
GATCCGGCGGCAGCCGAGGGTGGAT
NONE
Os.52532.1.S1_x_at--1008--4233Chr03:36114265..36114289 (25 bp)
GCCGAGGGTGGATCCGGTCGCCTTT
LOC_Os03g64010
Os.52532.1.S1_x_at--992--6831Chr09:20273350..20273374 (25 bp)
GTTTCTTTTTCGTGGAATCAGACAT
LOC_Os09g34340
Os.52532.1.S1_x_at--327--6753Chr12:6424619..6424643 (25 bp)
GTTCATGAGCTCTACTCGGATTAAA
LOC_Os12g11830
Os.52532.1.S1_x_at--966--4813Chr12:6424611..6424635 (25 bp)
GCTCTACTCGGATTAAAATTGCTCT
LOC_Os12g11830
Target Sequence 
GAGGGAATCGATGACTTCTTCCCCTCCCACACGCATCCCGTCGTCTCCCCTGCTCCCCTCTTGCACGGATCCTCCACCGG
TGACTGGATCCCGTCCTCTCTCTGGCCGCTAGCGGCGGCCGTGGCCTTCCCCACCGTGAGCGGCCACGGCAGCTCCCTCC
ACTACTTCCGATGGGTGGATCCGGCGGTGGCGGTGGCGGCGGCGGTGGCGGTGGCCAAGGGCGGATCCGGCGGCAGTCGG
TGGTGGTGGCATCGGTGACGGCCACCGCCTCTCTTCTGCCTTCGGTGGCGGTAGTGGCGTCGGGTGGATCCGGCGGCAGC
GGTGGCAGTGTGTGGCAGCGGCGAGTGGATCCGGCGGCAGTGGCGGCGGCCGAGGGCGATCCGGCGGCAGTCGGCGACGG
CCGCGGGTGGATCCGGCGGCAGCCGAGGGTGGATCCGGTCGCCTTTTTTTTTCGCCCGAGTTTGTTTCTTTTTCGTGGAA
TCAGACATTAGGATCAAGTTCATGAGCTCTACTCGGATTAAAATTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52532.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis