Browse Element(s) Details


Os.52613.1.S1_at

Description gb:AK068319.1
DB_XREF= gi:32978337
TID=Os.52613.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149E13, full insert sequence.
FL= gb:AK068319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4285010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42800Os.49369.1.S1_at3/116+25726916..25731891strubbelig receptor family 8, putative
LOC_Os06g42810Os.11523.1.S1_at11/116+25736421..25740550UBX domain containing protein, expressed
LOC_Os06g42820Os.46515.2.S1_x_at9/116+25740929..25741670hypothetical protein
LOC_Os06g42820Os.46515.2.S1_at9/116+25740929..25741670hypothetical protein
LOC_Os06g42840Os.15920.1.S1_at2/116+25744851..25745141hypothetical protein
LOC_Os06g42850Os.52613.1.S1_at10/116+25746268..25748947expressed protein
LOC_Os06g42860Os.53869.1.S1_at10/116+25753899..25756446ab-hydrolase associated lipase region family protein, expressed
LOC_Os06g42870NANA6+25757593..25758777transposon protein, putative, Pong sub-class
LOC_Os06g42880NANA6+25762645..25763073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42890OsAffx.28070.1.S1_at11/116+25766853..25768666myb family protein, putative
LOC_Os06g42900Os.40360.1.S1_at9/116+25772770..25776368hypothetical protein
LOC_Os06g42900Os.40360.1.S1_x_at7/116+25772770..25776368hypothetical protein
LOC_Os06g42900Os.40855.5.S1_x_at3/116+25772770..25776368hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52613.1.S1_at--1073--7211Chr06:25747368..25747392 (25 bp)
GTCGAACCACAGCTCGATGCTCGAG
LOC_Os06g42850
Os.52613.1.S1_at--857--5971Chr06:25747280..25747304 (25 bp)
GAGAACACCAAGATCATGCTGCCCC
LOC_Os06g42850
Os.52613.1.S1_at--489--2111Chr06:25746583..25746607 (25 bp)
ACAGGTCCTACCTGCACACGATATT
LOC_Os06g42850
Os.52613.1.S1_at--81--4051Chr06:25746565..25746589 (25 bp)
CGATATTCATGCTCGAGTGGACGCT
LOC_Os06g42850
Os.52613.1.S1_at--889--4771Chr06:25746531..25746555 (25 bp)
GCTGCTGGGCAAGACGATCGGTTTC
LOC_Os06g42850
Os.52613.1.S1_at--25--1211Chr06:25746482..25746506 (25 bp)
AGTTTTCCTGCATACAACAAGTTCA
LOC_Os06g42850
Os.52613.1.S1_at--1098--3171Chr06:25746414..25746438 (25 bp)
CAATTTTGCGGATGCGTGGCTGTGC
LOC_Os06g42850
Os.52613.1.S1_at--600--3891Chr06:25746395..25746419 (25 bp)
CTGTGCAGTTGGATCCTCGTGAGTG
LOC_Os06g42850
Os.52613.1.S1_at--426--8031Chr06:25746371..25746395 (25 bp)
GGAGTCATTTTTGGGTGCTCACGAT
LOC_Os06g42850
Os.52613.1.S1_at--1077--6951Chr06:25746345..25746369 (25 bp)
GTAGCGTGCGCATGTATGTGTATAC
LOC_Os06g42850
Os.52613.1.S1_at--406--1251Chr06:25746257..25746281 (25 bp)
AGATTTTGAGTCCATTGCTTCGTTC
NONE
Target Sequence 
GTCGAACCACAGCTCGATGCTCGAGGTGGAGCCCGTCAGCGACAGCGACGGCGAGTCCAGCGAGGAGACCGGCGACGAGG
ACCTGCTCGAGAACACCAAGATCATGCTGCCCCAAGCACACGTCATCTCCTTCCAGAAAAGACAGGCTCTAGTGACCTAT
CTGGAGAACAACAGAGCGGGGATCACGGTGTTCGGGTTCACGCTGGACAGGTCCTACCTGCACACGATATTCATGCTCGA
GTGGACGCTCTTCCTGTGGCTGCTGGGCAAGACGATCGGTTTCTCGTGAAAGCGAGGTAAAAAAAAAAGTTTTCCTGCAT
ACAACAAGTTCAGGTTGTTCTGGAACACATGTATGTTTGGTTGGTTGGTGGGTTGCAATTTTGCGGATGCGTGGCTGTGC
AGTTGGATCCTCGTGAGTGGAGTCATTTTTGGGTGCTCACGATAGTAGCGTGCGCATGTATGTGTATACGCATGTATGTG
TATACGTACGTATGTATTGATGTTTGTATAAAAACTGGTGTTAGCGGTGTACAGATTTTGAGTCCATTGCTTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis