Browse Element(s) Details


Os.52643.1.S1_at

Description gb:AK068492.1
DB_XREF= gi:32978510
TID=Os.52643.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156A01, full insert sequence.
FL= gb:AK068492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3840011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein
LOC_Os12g38380Os.18703.1.S1_at11/1112+23511836..23520923Suppressor of forked protein containing protein, expressed
LOC_Os12g38400Os.52643.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38400Os.12994.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38390OsAffx.20010.1.S1_at10/1112+23526583..23527355hypothetical protein
LOC_Os12g38410OsAffx.32083.3.S1_x_at11/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_x_at9/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_at6/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.2.S1_x_at2/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.4.S1_x_at1/1112+23542601..23546356hypothetical protein
LOC_Os12g38420Os.6211.1.S1_at11/1112+23550623..23551541expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008356biological_processasymmetric cell division
GO:0009414biological_processresponse to water deprivation
GO:0009416biological_processresponse to light stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009946biological_processproximal/distal axis specification
GO:0009965biological_processleaf morphogenesis
GO:0010118biological_processstomatal movement
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52643.1.S1_at--49--10591Chr12:23524109..23524133 (25 bp)
TTCTCATGTGCTTGTTTTCCTCTTA
LOC_Os12g38400
Os.52643.1.S1_at--192--6811Chr12:23524096..23524120 (25 bp)
GTTTTCCTCTTAGCTAATGACTTTT
LOC_Os12g38400
Os.52643.1.S1_at--1069--6311Chr12:23524023..23524047 (25 bp)
GATGAAATCCTACATTGAGCCAAAA
LOC_Os12g38400
Os.52643.1.S1_at--498--8931Chr12:23523968..23523992 (25 bp)
TGACCTCGTCCTCTATTTGGATGAA
LOC_Os12g38400
Os.52643.1.S1_at--487--5351Chr12:23523946..23523970 (25 bp)
GAAGATTTCACCTTTGCTACTAATA
LOC_Os12g38400
Os.52643.1.S1_at--101--3711Chr12:23523930..23523954 (25 bp)
CTACTAATAGACGAGCCTTGCAAAC
LOC_Os12g38400
Os.52643.1.S1_at--913--3111Chr12:23523831..23523855 (25 bp)
AATTTGCTACACGTCATACTCATGC
LOC_Os12g38400
Os.52643.1.S1_at--174--651Chr12:23523810..23523834 (25 bp)
ATGCATACATGCCAAGTTCACACGC
LOC_Os12g38400
Os.52643.1.S1_at--30--2171Chr12:23523791..23523815 (25 bp)
ACACGCACGCACAACTGGTTACAGT
LOC_Os12g38400
Os.52643.1.S1_at--102--5591Chr12:23523711..23523735 (25 bp)
GAAATGTTCGCCTTAATCTTATAGA
LOC_Os12g38400
Os.52643.1.S1_at--680--7511Chr12:23523594..23523618 (25 bp)
GTGGATATCTACTCATTTGTTGCAT
LOC_Os12g38400
Target Sequence 
TTCTCATGTGCTTGTTTTCCTCTTAGCTAATGACTTTTATCTTNTCTGNTGTAGAAATTAGAATCCATGCTCATTTACNA
TTGTAAGATGAAATCCTACATTGAGCCAAAAATCTAACTTTCTTTTCTTTTTGNTTGTACATGACCTCGTCCTCTATTTG
GATGAAGATTTCACCTTTGCTACTAATAGACGAGCCTTGCAAACAGGCTAAAGAAATGATCTTTTTTTTTTATTTGAGTA
AATTTCAGAAATCTACAACTATTTGGGTCAAAACTATCAATTTGCTACACGTCATACTCATGCATACATGCCAAGTTCAC
ACGCACGCACAACTGGTTACAGTTGCAGAACTTGCAGTTTAATGATAAAATCGTTTGATATAGTTACAACAGTTTTGCGA
AATGTTCGCCTTAATCTTATAGAAAAGCGATACCTTTGACCAAATAACTACAGCTTTCTGAAATTTACTCCTTTATATAT
ATTTTGCATCACGAGAAACAATTTTAATCACTTAGGTGGATATCTACTCATTTGTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis