Browse Element(s) Details


Os.52645.1.S1_at

Description gb:AK068496.1
DB_XREF= gi:32978514
TID=Os.52645.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155M21, full insert sequence.
FL= gb:AK070550.1 gb:AK068496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1739011/11Auxin-independent growth promoter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17350NANA6+10054983..10059671retrotransposon protein, putative, unclassified
LOC_Os06g17360NANA6+10063034..10064070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17370OsAffx.8847.1.S1_x_at1/116+10064914..10068955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17380OsAffx.23206.1.S1_x_at5/116+10071239..10074357hypothetical protein
LOC_Os06g17380Os.53180.1.S1_at1/116+10071239..10074357hypothetical protein
LOC_Os06g17380Os.51919.1.S1_at1/116+10071239..10074357hypothetical protein
LOC_Os06g17390Os.52645.1.S1_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17390Os.52645.1.S2_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17400OsAffx.27685.1.S1_at11/116+10095791..10096168hypothetical protein
LOC_Os06g17410OsAffx.15472.1.S1_at3/116+10100313..10101516Dof domain, zinc finger family protein, expressed
LOC_Os06g17419OsAffx.9243.1.S1_at1/116+10104233..10104550NA
LOC_Os06g17430OsAffx.27944.1.S1_x_at6/116+10107397..10107660hypothetical protein
LOC_Os06g17430OsAffx.27944.1.S1_at5/116+10107397..10107660hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52645.1.S1_at--699--2371Chr06:10082424..10082448 (25 bp)
AAACCGGATGGGATCAGCTTCAAAG
LOC_Os06g17390
Os.52645.1.S1_at--860--8111Chr06:10082398..10082422 (25 bp)
GGACGGTGATTCTTGACAGACCTAA
LOC_Os06g17390
Os.52645.1.S1_at--261--5271Chr06:10082342..10082366 (25 bp)
GAATGCCTGCAAGATTCTAATCTCT
LOC_Os06g17390
Os.52645.1.S1_at--641--231Chr06:10082289..10082313 (25 bp)
ATATTTCATCCACGCTATACTGTTC
LOC_Os06g17390
Os.52645.1.S1_at--380--7711Chr06:10082228..10082252 (25 bp)
GGGTCCTCGCTATTTTGAAGTGAAA
LOC_Os06g17390
Os.52645.1.S1_at--26--10251Chr06:10082215..10082239 (25 bp)
TTTGAAGTGAAAAGGCGGCTCGGCC
LOC_Os06g17390
Os.52645.1.S1_at--828--9451Chr06:10082196..10082220 (25 bp)
TCGGCCTCAAGCTTGAGCCATAGAT
LOC_Os06g17390
Os.52645.1.S1_at--658--8011Chr06:10082100..10082124 (25 bp)
GGAGGCAGATTTGTTTATTCCACAA
LOC_Os06g17390
Os.52645.1.S1_at--578--10491Chr06:10082013..10082037 (25 bp)
TTAAAGAGAGATGCTGGATCCCCAT
LOC_Os06g17390
Os.52645.1.S1_at--248--3791Chr06:10081988..10082012 (25 bp)
CTCGGATCTCGGGTGGTGTAACATA
LOC_Os06g17390
Os.52645.1.S1_at--645--10191Chr06:10081873..10081897 (25 bp)
TATTGAATCGATACAGCCTTTATGA
LOC_Os06g17390
Target Sequence 
AAACCGGATGGGATCAGCTTCAAAGAGGACGGTGATTCTTGACAGACCTAAGGAAGAGGACTATTTTTATGCCAATCCCC
AAGAATGCCTGCAAGATTCTAATCTCTTACATACATCATGATATCCACTATGTTAATATTTCATCCACGCTATACTGTTC
CATTCTTTCGTAAATGCAACTGTGAATCAAGAGTTGGGGTCCTCGCTATTTTGAAGTGAAAAGGCGGCTCGGCCTCAAGC
TTGAGCCATAGATGAATTCAAACTCAAGGACAAGGGAGGTAAGGGGGGTGTTGTTTGTAGTTGGTAAATACACATAATAG
AAATGGAGGCAGATTTGTTTATTCCACAAAATAAAGAGTAACACTCTTTGTATAGATGGTTGATAGAATCTACCATGAAG
GCCAAGGTAATTTAAAGAGAGATGCTGGATCCCCATCTCGGATCTCGGGTGGTGTAACATAGCAATTGTTCTTGGTAGCC
CCCCCTCCCTCCCCATCGGCAAAAATTTTGTCCACCAAAGTTGTTGGAAAAAGAATTATATATACACTGTTTATTGAATC
GATACAGCCTTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis