Browse Element(s) Details

Os.5275.1.S1_at

Description

gb:AK060212.1
DB_XREF= gi:32970230
TID=Os.5275.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B09, full insert sequence.
FL= gb:AK060212.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41440	10/11	legume lectins beta domain PF\|00139 containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41380	Os.57073.1.S1_at	11/11	6	+	24804549..24807592	expressed protein
LOC_Os06g41390	Os.5942.1.S1_at	11/11	6	+	24807830..24816725	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390	Os.49688.1.S1_at	9/11	6	+	24807830..24816725	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41410	Os.35458.1.S1_at	11/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.15876.1.A1_at	9/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.36709.1.S1_x_at	3/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.8753.4.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.6763.1.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.5273.1.S1_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41440	Os.5275.1.S1_at	10/11	6	+	24830707..24838945	legume lectins beta domain PF\|00139 containing protein, putative, expressed
LOC_Os06g41450	Os.27788.1.S1_at	11/11	6	+	24842687..24843763	VQ motif family protein, expressed
LOC_Os06g41460	Os.10827.1.S1_x_at	11/11	6	+	24849445..24852357	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460	Os.46055.2.S1_x_at	6/11	6	+	24849445..24852357	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.1.S1_s_at	11/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.7.S1_s_at	11/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.2.S1_x_at	5/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.5.S1_x_at	2/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5275.1.S1_at--921--897	1	Chr06:24837661..24837685 (25 bp)	TGAACATCCACTTCTCGTCGAGAAA	LOC_Os06g41440
Os.5275.1.S1_at--1145--33	1	Chr06:24837713..24837737 (25 bp)	ATAACTGTTTATGCACCTCCATTGC	LOC_Os06g41440
Os.5275.1.S1_at--713--1013	1	Chr06:24837722..24837746 (25 bp)	TATGCACCTCCATTGCGTAGGCAAG	LOC_Os06g41440
Os.5275.1.S1_at--189--1005	1	Chr06:24837766..24837790 (25 bp)	TAGATCTGTCTTAGTTGGGAACCTT	LOC_Os06g41440
Os.5275.1.S1_at--734--869	1	Chr06:24838456..24838480 (25 bp)	TGTGCATACAAGGTTCTGCTGTTCT	LOC_Os06g41440
Os.5275.1.S1_at--643--121	1	Chr06:24838497..24838521 (25 bp)	AGTTTTGCTTCCGATGAGCTTCGAC	LOC_Os06g41440
Os.5275.1.S1_at--272--591	1	NONE	GAGCTTCGACAAGTATTCTCTGTAG	NONE
Os.5275.1.S1_at--259--843	1	Chr06:24838552..24838576 (25 bp)	TGGCCAGTTCCATACCTCTAAAATA	LOC_Os06g41440
Os.5275.1.S1_at--293--251	1	Chr06:24838680..24838704 (25 bp)	AACATCGGCACTGCTTGATTACCTT	LOC_Os06g41440
Os.5275.1.S1_at--504--117	1	Chr06:24838848..24838872 (25 bp)	AGTACGCTGGTTGTCCAGAATCCAG	LOC_Os06g41440
Os.5275.1.S1_at--859--655	1	Chr06:24838872..24838896 (25 bp)	GATTACACACGTCCTGTTTCTGAGA	LOC_Os06g41440

Target Sequence

TGAACATCCACTTCTCGTCGAGAAAAGAGAGAAGGGTGACTGGGTGCTTCCAATAACTGTTTATGCACCTCCATTGCGTA
GGCAAGCAATTCATGGAAGAAATGATAGATCTGTCTTAGTTGGGAACCTTTTCAACTCTTGAAGATGTGCATACAAGGTT
CTGCTGTTCTTTTCAAAACCCCTACCAGTTTTGCTTCCGATGAGCTTCGACAAGTATTCTCTGTAGTTCACTTTGCACAG
CTGGCCAGTTCCATACCTCTAAAATACATGGGAGATCCGGAACACATAAAGCGAGAACAAACTTGTGTTAGATCAAGTGT
GCAAATCACAGAGTTCGTCACCTGAGAACAGGCAGCTGTGCCTTGATGTAACATCGGCACTGCTTGATTACCTTGATGTA
CTATAGGCATTCCTTTGATAGAGGGACAAAACTTTTGGGGTGCTTGATTAGCTGTTATACCCCTTTTCATTCGGTATGTG
TATACGTGAGACATCTGCCTTGTAATTCAATTCTTTTGTGGAAACCAAACATATAGCAGTACGCTGGTTGTCCAGAATCC
AGATTACACACGTCCTGTTTCTGAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis