Browse Element(s) Details


Os.52754.1.S1_x_at

Description gb:AK069094.1
DB_XREF= gi:32979118
TID=Os.52754.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006I05, full insert sequence.
FL= gb:AK069094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5022011/11Tat binding protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g50190OsAffx.29687.2.S1_at10/113+28576520..28578055hypothetical protein
LOC_Os03g50190OsAffx.14332.1.S1_x_at1/113+28576520..28578055hypothetical protein
LOC_Os03g50210Os.22831.1.S1_at11/113+28580817..28582548expressed protein
LOC_Os03g50220Os.52754.2.S1_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50220Os.52754.1.S1_x_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50230NANA3+28587672..28592810Protein kinase domain containing protein, expressed
LOC_Os03g50240OsAffx.30187.3.S1_at3/113+28594290..28594523hypothetical protein
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein
LOC_Os03g50280OsAffx.13437.1.S1_at10/113+28604454..28606583expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52754.1.S1_x_at--593--6271Chr03:28582810..28582834 (25 bp)
GATGTCGGTGTTAACTTGCAGTCTT
LOC_Os03g50220
Os.52754.1.S1_x_at--694--9871Chr03:28582786..28582810 (25 bp)
TACAGTGACATGCTGACGAGTCTCA
LOC_Os03g50220
Os.52754.1.S1_x_at--156--5311Chr03:28582755..28582779 (25 bp)
GAAGGAAAGTATCCCGCTGATCATC
LOC_Os03g50220
Os.52754.1.S1_x_at--262--8851Chr03:28582738..28582762 (25 bp)
TGATCATCCAGCATGGGAGTTTCTC
LOC_Os03g50220
Os.52754.1.S1_x_at--394--5951Chr03:28582691..28582715 (25 bp)
GAGAAGTTTTACCAGCTACAGGCCT
LOC_Os03g50220
Os.52754.1.S1_x_at--587--4831Chr03:28582677..28582701 (25 bp)
GCTACAGGCCTACAGTTCATGAATA
LOC_Os03g50220
Os.52754.1.S1_x_at--710--651Chr03:28582659..28582683 (25 bp)
ATGAATACTCGTAGTCCAGACCCGG
LOC_Os03g50220
Os.52754.1.S1_x_at--709--5811Chr03:28582641..28582665 (25 bp)
GACCCGGTCATATCTGCTGTTGAAA
LOC_Os03g50220
Os.52754.1.S1_x_at--458--531Chr03:28582587..28582611 (25 bp)
ATCGCTGCATTAGTTTATTTCCCCA
LOC_Os03g50220
Os.52754.1.S1_x_at--290--10351Chr03:28582573..28582597 (25 bp)
TTATTTCCCCAGAGGTAACGAGATT
LOC_Os03g50220
Os.52754.1.S1_x_at--161--171Chr03:28582540..28582564 (25 bp)
ATTTTGGTCCCAGTTGTTGTAATAT
LOC_Os03g50220
Target Sequence 
GATGTCGGTGTTAACTTGCAGTCTTACAGTGACATGCTGACGAGTCTCAGTAAAAGAAGGAAAGTATCCCGCTGATCATC
CAGCATGGGAGTTTCTCAAATCAAATGTAGGTTACATGAGAGAAGTTTTACCAGCTACAGGCCTACAGTTCATGAATACT
CGTAGTCCAGACCCGGTCATATCTGCTGTTGAAATTTCTAGTTAATGCATATAAGTTAGTAGTATCGCTGCATTAGTTTA
TTTCCCCAGAGGTAACGAGATTAGAGGAATATTTTGGTCCCAGTTGTTGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52754.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis