Browse Element(s) Details


Os.52778.1.S1_at

Description gb:AK069210.1
DB_XREF= gi:32979234
TID=Os.52778.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012M02, full insert sequence.
FL= gb:AK069210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5081011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50810Os.52778.1.S1_at11/112+31032683..31034651expressed protein
LOC_Os02g50820Os.8916.1.S1_at11/112+31040376..31045820Permease I, putative, expressed
LOC_Os02g50830Os.9457.1.S1_at6/112+31049884..31053287expressed protein
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005874cellular_componentmicrotubule
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52778.1.S1_at--808--2011Chr02:31033239..31033263 (25 bp)
ACTAGTGTCAGGTTTCCAGGACCAT
LOC_Os02g50810
Os.52778.1.S1_at--315--231Chr02:31033216..31033240 (25 bp)
ATATTGCGAGATTCCTTACCACTTC
LOC_Os02g50810
Os.52778.1.S1_at--264--8771Chr02:31033143..31033167 (25 bp)
TGTTTACCCACCTGATTGCAGTTGG
LOC_Os02g50810
Os.52778.1.S1_at--497--9051Chr02:31033127..31033151 (25 bp)
TGCAGTTGGCGCGTCAGGACAGCAA
LOC_Os02g50810
Os.52778.1.S1_at--269--3051Chr02:31032983..31033007 (25 bp)
AATCGTCGAGCGGTGAATCTGTATT
LOC_Os02g50810
Os.52778.1.S1_at--28--1811Chr02:31032946..31032970 (25 bp)
ACCCGGCCTTGATTAGCTTTGCAAA
LOC_Os02g50810
Os.52778.1.S1_at--87--2311Chr02:31032924..31032948 (25 bp)
AAAGGTTGGCGCGTTTGCACACTGT
LOC_Os02g50810
Os.52778.1.S1_at--203--671Chr02:31032876..31032900 (25 bp)
ATGACAGGGCTGCTCGGGAAACTCT
LOC_Os02g50810
Os.52778.1.S1_at--967--9451Chr02:31032854..31032878 (25 bp)
TCTGGCCCTGATGAATCCGTGTAAA
LOC_Os02g50810
Os.52778.1.S1_at--830--3671Chr02:31032784..31032808 (25 bp)
CTTTCTTGATACATTTGCACCTGGA
LOC_Os02g50810
Os.52778.1.S1_at--204--2431Chr02:31032713..31032737 (25 bp)
AAAACTCTGTACTTGATGCTCTCCT
LOC_Os02g50810
Target Sequence 
ACTAGTGTCAGGTTTCCAGGACCATATTGCGAGATTCCTTACCACTTCTGAGACCGCGGCAACATGCAAAGGTTCCATCT
TTTCTGATTACTCTACTGTTTACCCACCTGATTGCAGTTGGCGCGTCAGGACAGCAACCGGAGCTCCAGCGCGCGGCACC
GGCAATGGCGGCCTTCGCTGCACAGCATCGACGAAACGACGGGGAGCTGATGCCCTGCCAATGGCGTCAAGCATAGAACA
CGATCATACGATGGTTAATCGTCGAGCGGTGAATCTGTATTTTTCGGTGTTTCACCCGGCCTTGATTAGCTTTGCAAAGG
TTGGCGCGTTTGCACACTGTGAAGTTGAGTTTGACACCTCAGGATGACAGGGCTGCTCGGGAAACTCTGGCCCTGATGAA
TCCGTGTAAATTTTCAGGCTTTGATGGGGCCTTGTTGTGAGGTTGCTCGTTTTTTCTTTCTTGATACATTTGCACCTGGA
ATCAGAACAATGTTGCTCCAGAAAAAAAGAGAAAAAAAAAGCCAGAAAAACTCTGTACTTGATGCTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis