Browse Element(s) Details


Os.5279.1.S1_at

Description gb:AK067950.1
DB_XREF= gi:32977968
TID=Os.5279.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127L15, full insert sequence.
FL= gb:AK060648.1 gb:AK067950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4904011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein
LOC_Os06g49010Os.11215.1.S1_a_at10/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49010OsAffx.2442.1.S1_x_at1/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49020Os.49860.1.S1_at11/116+29710344..2971161726S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030Os.11089.1.S1_at11/116+29712471..29715990expressed protein
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5279.1.S1_at--719--2931Chr06:29725655..29725679 (25 bp)
AAGGCAACTGCAGCTGCGAATCGAA
LOC_Os06g49040
Os.5279.1.S1_at--902--5371Chr06:29725677..29725701 (25 bp)
GAAGAACACGCAAGATACCTGCAGA
LOC_Os06g49040
Os.5279.1.S1_at--1054--1351Chr06:29725712..29725736 (25 bp)
AGAGCAGCACAAGGTCAGCATCAGC
LOC_Os06g49040
Os.5279.1.S1_at--891--5231Chr06:29725767..29725791 (25 bp)
GAATCGCAACCGGAATCGCCAAAAC
LOC_Os06g49040
Os.5279.1.S1_at--581--8211Chr06:29725778..29725802 (25 bp)
GGAATCGCCAAAACCAACATCAGAA
LOC_Os06g49040
Os.5279.1.S1_at--237--9671Chr06:29725839..29725863 (25 bp)
TCAGCTCAGCCATCATCCGAGGATA
LOC_Os06g49040
Os.5279.1.S1_at--49--6171Chr06:29725857..29725881 (25 bp)
GAGGATAAATCACCAGACGCAGAAT
LOC_Os06g49040
Os.5279.1.S1_at--405--771Chr06:29725924..29725948 (25 bp)
ATGTCGGCGATGAGCACCAGTGTTC
LOC_Os06g49040
Os.5279.1.S1_at--140--5951Chr06:29725935..29725959 (25 bp)
GAGCACCAGTGTTCATAGCTTGTGT
LOC_Os06g49040
Os.5279.1.S1_at--772--3211Chr06:29725974..29725998 (25 bp)
CAAGGATTTCTCAGCTGCATGCAAA
LOC_Os06g49040
Os.5279.1.S1_at--770--5132Chr06:29725994..29726018 (25 bp)
GCAAATGCATCTCTCTTCTTGAGAA
LOC_Os06g49040
Target Sequence 
AAGGCAACTGCAGCTGCGAATCGAAGAACACGCAAGATACCTGCAGAGAATACTGGAAGAGCAGCACAAGGTCAGCATCA
GCAGCAACTCCCTCTCACTGAAACCCCCAGCCGAATCGCAACCGGAATCGCCAAAACCAACATCAGAAAAGAAGGAGGCC
GAATCCGAAGCAGGCGCCGCCACTTCAGCTCAGCCATCATCCGAGGATAAATCACCAGACGCAGAATGCAAGTCGTCGCC
GCCGGTGGGTAGCAAGAGAGCTAGGGTTCATGTCGGCGATGAGCACCAGTGTTCATAGCTTGTGTANAGAGGAAGAAGGC
AAGGATTTCTCAGCTGCATGCAAATGCATCTCTCTTCTTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis