Browse Element(s) Details


Os.52827.1.S1_at

Description gb:AK069468.1
DB_XREF= gi:32979492
TID=Os.52827.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024P20, full insert sequence.
FL= gb:AK069468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3247010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32440Os.41248.4.S1_x_at3/1112+19540387..19546403retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g32450OsAffx.7768.1.S1_at11/1112+19550313..19556635expressed protein
LOC_Os12g32470Os.52827.1.S1_at10/1112+19568465..19573686expressed protein
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52827.1.S1_at--757--6911Chr12:19571859..19571883 (25 bp)
GTATGTCCTCATACCTTAACTTGTG
LOC_Os12g32470
Os.52827.1.S1_at--369--5971Chr12:19571988..19572012 (25 bp)
GAGAAGCTCATCGTTTTTCACGTAA
LOC_Os12g32470
Os.52827.1.S1_at--908--10291Chr12:19572003..19572027 (25 bp)
TTTCACGTAACACAGCATCGCACTA
LOC_Os12g32470
Os.52827.1.S1_at--753--5991Chr12:19572040..19572332 (25 bp)
GAGACGACTTATCCCGAGCAGTAAT
LOC_Os12g32470
Os.52827.1.S1_at--355--2431Chr12:19572338..19572362 (25 bp)
AAAAGCTCCATTCGACATGGTCGAC
LOC_Os12g32470
Os.52827.1.S1_at--1161--5451NONE
GAACTCAAGAGGTGCTTTCCAGGGT
NONE
Os.52827.1.S1_at--854--9211Chr12:19572383..19572407 (25 bp)
TCCAGGGTTGCCGTGTAAGATTTAT
LOC_Os12g32470
Os.52827.1.S1_at--271--4871Chr12:19572408..19572432 (25 bp)
GCTATGACATTAGACCCACTTTGGA
LOC_Os12g32470
Os.52827.1.S1_at--191--9991Chr12:19573525..19573549 (25 bp)
TAGCCCTGCGATATTTTGTACTCAA
LOC_Os12g32470
Os.52827.1.S1_at--835--4991Chr12:19573597..19573621 (25 bp)
GCATGTTGTCGTGCTCAATTGAGAA
LOC_Os12g32470
Os.52827.1.S1_at--304--9811Chr12:19573631..19573655 (25 bp)
TAACGTCTGTTAGCAACCTGGTTCC
LOC_Os12g32470
Target Sequence 
GTATGTCCTCATACCTTAACTTGTGGATTGAGAATTTGACACCAGACCAACATAATCTGTACAACTCAATCACAAGTTAT
AAGGAAAAAGTACCCAATAATAAAACTTTCATGTATGGGGATACAACTCGAGAAGCTCATCGTTTTTCACGTAACACAGC
ATCGCACTACATAAGTCATTGGAGACGACTTATCCCGAGCAGTAATAGGACAAAAGCTCCATTCGACATGGTCGACAAAG
AACTCAAGAGGTGCTTTCCAGGGTTGCCGTGTAAGATTTATGCTATGACATTAGACCCACTTTGGAACAAATGATTGGGG
TGTGAGGAGTTTTCTAACATTTGCAAGTCCAATTTTTACAGTGGGAAGTGAAGTTTCTCCCCCAACGATATTCTTGTGGC
TGTCGATTAGCCCTGCGATATTTTGTACTCAATCCAGAATGAAAATGTATGCACTCAATCCAGAATGAAAATGCATGTAG
CATGTTGTCGTGCTCAATTGAGAATATGTAATGTAACGTCTGTTAGCAACCTGGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis