Browse Element(s) Details


Os.52861.1.S1_at

Description gb:AK069635.1
DB_XREF= gi:32979659
TID=Os.52861.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028N13, full insert sequence.
FL= gb:AK069635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1076011/11expressed protein
LOC_Os12g388204/11hypothetical protein
LOC_Os09g129003/11hypothetical protein
LOC_Os01g413001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10724NANA10+5701085..5701291hypothetical protein
LOC_Os10g10730OsAffx.30391.1.S1_at11/1110+5702828..5707548hypothetical protein
LOC_Os10g10740OsAffx.18226.1.S1_at7/1110+5708084..5708692hypothetical protein
LOC_Os10g10744OsAffx.18226.2.S1_at10/1110+5709103..5709504hypothetical protein
LOC_Os10g10750OsAffx.20641.1.S1_at11/1110+5712245..5713116hypothetical protein
LOC_Os10g10760Os.52861.1.S1_at11/1110+5714908..5715602expressed protein
LOC_Os10g10770Os.47463.1.S1_x_at5/1110+5717113..5720810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10770Os.14491.2.S1_x_at3/1110+5717113..5720810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10780NANA10+5723643..5726974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10794OsAffx.20657.1.S1_at5/1110+5737077..5737304hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52861.1.S1_at--679--1731Chr10:5715125..5715149 (25 bp)
ACCATGCGCGTGGATCTGGCTACGG
LOC_Os10g10760
Os.52861.1.S1_at--444--7411Chr10:5715211..5715235 (25 bp)
GTGTGAACCTGCACGGGTGAAGACT
LOC_Os10g10760
Os.52861.1.S1_at--953--572Chr10:5715291..5715315 (25 bp)
ATCCATGGAGCAGTGGCGGGCATCC
LOC_Os10g10760
Os.52861.1.S1_at--235--1796Chr10:5715330..5715354 (25 bp)
ACCGAGCATGCCTCTCTCCGAGTTT
LOC_Os10g10760
Os.52861.1.S1_at--307--9297Chr10:5715346..5715370 (25 bp)
TCCGAGTTTTCCATTTTCATCTTCT
LOC_Os10g10760
Os.52861.1.S1_at--1027--4033Chr10:5715398..5715422 (25 bp)
CGTTGTTTCCGTTCTCAATCTGGAA
LOC_Os10g10760
Os.52861.1.S1_at--961--5851Chr10:5715431..5715455 (25 bp)
GAGCCACCTTTTTTATTCGACGGAT
LOC_Os10g10760
Os.52861.1.S1_at--4--5572Chr10:5715468..5715492 (25 bp)
GAAAGCTGCCAGGATCAACAACGCC
LOC_Os10g10760
Os.52861.1.S1_at--606--8116Chr10:5715523..5715547 (25 bp)
GGACGTTGTCCTGTTATTTGATCTC
LOC_Os10g10760
Os.52861.1.S1_at--1067--10812Chr10:5715528..5715552 (25 bp)
TTGTCCTGTTATTTGATCTCTCCGA
LOC_Os10g10760
Os.52861.1.S1_at--840--6412Chr10:5715542..5715566 (25 bp)
GATCTCTCCGATGTGTTATTGCATT
LOC_Os10g10760
Target Sequence 
ACCATGCGCGTGGATCTGGCTACGGCGGCGCGGATCCGGCGCGGTTGCAGGCGGCGCGTCGGCGGATCCAGCGCCCCCTT
CCTCCCGTGTGAACCTGCACGGGTGAAGACTATGGGCAAGAGGCGAGACGGCGGCGACCATTGCGGCGGTGAGCTTGTCC
TCCGGCATCCATGGAGCAGTGGCGGGCATCCATGGAGACGGAGGCACCGAGCATGCCTCTCTCCGAGTTTTCCATTTTCA
TCTTCTTCACCGGCGGAAGAAACGGCCACCGCCCGTTGTTTCCGTTCTCAATCTGGAAACCACCAAGAGCCACCTTTTTT
ATTCGACGGATCCAGAAGGAGAAGAAAGCTGCCAGGATCAACAACGCCATTAATCAATTATTTTTCCTGATTTTAGTTGG
ACGTTGTCCTGTTATTTGATCTCTCCGATGTGTTATTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis