Browse Element(s) Details


OsAffx.18226.2.S1_at

Description tigr:9638.m01041
TID=OsAffx.18226.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1160011/11hypothetical protein
LOC_Os10g1074410/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11530OsAffx.20644.1.S1_at11/1110+6151554..6153775hypothetical protein
LOC_Os10g11540OsAffx.8391.1.S1_at9/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11540OsAffx.32036.1.S1_at1/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11550NANA10+6159467..6159940hypothetical protein
LOC_Os10g11560Os.24831.1.S1_x_at8/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_x_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_s_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.55127.1.S1_at1/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11570OsAffx.20020.1.S1_x_at1/1110+6166843..6168586hypothetical protein
LOC_Os10g11580Os.16301.1.S1_at11/1110+6169665..6170947Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os10g11590OsAffx.20641.1.S1_at11/1110+6174358..6175232hypothetical protein
LOC_Os10g11600OsAffx.18226.2.S1_at11/1110+6177974..6178375hypothetical protein
LOC_Os10g11610OsAffx.18226.1.S1_at7/1110+6178786..6179394hypothetical protein
LOC_Os10g11620OsAffx.30391.1.S1_at11/1110+6179930..6184650hypothetical protein
LOC_Os10g11630NANA10+6186187..6186393hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_x_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11650Os.27435.1.S1_x_at5/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11650Os.46334.1.S1_x_at3/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.2.S1_at11/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.1.S1_at3/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.4.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660Os.26886.3.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11666NANA10+6203287..6205189retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18226.2.S1_at--173--1052Chr10:6178038..6178062 (25 bp)
AGGTGCAGCGGCGAGCTATTCCACC
LOC_Os10g11600
OsAffx.18226.2.S1_at--247--10172Chr10:6178054..6178078 (25 bp)
TATTCCACCGGTGCAAGTGACGGGT
LOC_Os10g11600
OsAffx.18226.2.S1_at--230--5931Chr10:6178104..6178128 (25 bp)
GAGCAGTTGTGCCTAAGCGTTCCCG
LOC_Os10g11600
OsAffx.18226.2.S1_at--737--10392Chr10:6178164..6178188 (25 bp)
TTTTGCGCTGGGTGTGCTCCAGTAT
LOC_Os10g11600
OsAffx.18226.2.S1_at--191--8692Chr10:6178176..6178200 (25 bp)
TGTGCTCCAGTATGCGATTTGTCGG
LOC_Os10g11600
OsAffx.18226.2.S1_at--966--3552Chr10:6178207..6178231 (25 bp)
CATCTTCACCATCTTAGCTTGGATG
LOC_Os10g11600
OsAffx.18226.2.S1_at--921--10012Chr10:6178221..6178245 (25 bp)
TAGCTTGGATGGTTCGCCCGCTGGT
LOC_Os10g11600
OsAffx.18226.2.S1_at--281--6232Chr10:6178280..6178304 (25 bp)
GATGGCCACTCTGATTACTTATGCG
LOC_Os10g11600
OsAffx.18226.2.S1_at--904--10132Chr10:6178299..6178323 (25 bp)
TATGCGAGGCAGTTTGTCTCTTCAT
LOC_Os10g11600
OsAffx.18226.2.S1_at--222--6872Chr10:6178310..6178334 (25 bp)
GTTTGTCTCTTCATTGTGTTGGCAC
LOC_Os10g11600
OsAffx.18226.2.S1_at--275--3612Chr10:6178321..6178345 (25 bp)
CATTGTGTTGGCACCGATTGTTTTT
LOC_Os10g11600
Target Sequence 
AGGTGCAGCGGCGAGCTATTCCACCGGTGCAAGTGACGGGTGGCGCTGCCGTTGGCGAGGGCGCTGGAGCAGTTGTGCCT
AAGCGTTCCCGTCGAGGGGAAACCTTCCTGGCAGGGGTGGCCATTGTTTTGCGCTGGGTGTGCTCCAGTATGCGATTTGT
CGGGGCAACCATCTTCACCATCTTAGCTTGGATGGTTCGCCCGCTGGTCTTGCTCTGGAAATGGTGGCGAGATCTGATCG
ATGATGGCCACTCTGATTACTTATGCGAGGCAGTTTGTCTCTTCATTGTGTTGGCACCGATTGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18226.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis