Browse Element(s) Details


OsAffx.18226.1.S1_at

Description tigr:9638.m00950
TID=OsAffx.18226.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g116107/11hypothetical protein
LOC_Os10g107407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11540OsAffx.8391.1.S1_at9/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11540OsAffx.32036.1.S1_at1/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11550NANA10+6159467..6159940hypothetical protein
LOC_Os10g11560Os.24831.1.S1_x_at8/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_x_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_s_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.55127.1.S1_at1/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11570OsAffx.20020.1.S1_x_at1/1110+6166843..6168586hypothetical protein
LOC_Os10g11580Os.16301.1.S1_at11/1110+6169665..6170947Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os10g11590OsAffx.20641.1.S1_at11/1110+6174358..6175232hypothetical protein
LOC_Os10g11600OsAffx.18226.2.S1_at11/1110+6177974..6178375hypothetical protein
LOC_Os10g11610OsAffx.18226.1.S1_at7/1110+6178786..6179394hypothetical protein
LOC_Os10g11620OsAffx.30391.1.S1_at11/1110+6179930..6184650hypothetical protein
LOC_Os10g11630NANA10+6186187..6186393hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_x_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11650Os.27435.1.S1_x_at5/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11650Os.46334.1.S1_x_at3/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.2.S1_at11/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.1.S1_at3/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.4.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660Os.26886.3.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11666NANA10+6203287..6205189retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18226.1.S1_at--261--2172Chr10:5708466..5708490 (25 bp)
ACACCACCGAGAATGCCTACGAGCA
LOC_Os10g10740
OsAffx.18226.1.S1_at--64--5972Chr10:5708474..5708498 (25 bp)
GAGAATGCCTACGAGCAAGCTCTTG
LOC_Os10g10740
OsAffx.18226.1.S1_at--628--9452Chr10:5708533..5708557 (25 bp)
TCTGGAATCCCGCTATCGGCGCCTA
LOC_Os10g10740
OsAffx.18226.1.S1_at--59--10152Chr10:5708546..5708570 (25 bp)
TATCGGCGCCTAGCTCAAGAGCACA
LOC_Os10g10740
OsAffx.18226.1.S1_at--362--2752Chr10:5708562..5708586 (25 bp)
AAGAGCACACAACCTTACTTCTCTG
LOC_Os10g10740
OsAffx.18226.1.S1_at--516--1052Chr10:5708589..5708613 (25 bp)
AGGTGTTCACGATAGCCCGCTACAT
LOC_Os10g10740
OsAffx.18226.1.S1_at--225--1892Chr10:5708597..5708621 (25 bp)
ACGATAGCCCGCTACATCGAGAGCG
LOC_Os10g10740
OsAffx.18226.1.S1_at--976--4071NONE
CGACCGCCGGCGAAGATTTGGATGA
NONE
OsAffx.18226.1.S1_at--431--10672Chr10:5710711..5710735 (25 bp)
TTCCTTTGCTGTCGGCGGCTGCCAG
NONE
OsAffx.18226.1.S1_at--1156--8072Chr10:5710803..5710827 (25 bp)
GGACCACGTCGCAGCGGAGCACTCG
NONE
OsAffx.18226.1.S1_at--677--5072Chr10:5710813..5710837 (25 bp)
GCAGCGGAGCACTCGTGCACCAATC
NONE
Target Sequence 
ACACCACCGAGAATGCCTACGAGCAAGCTCTTGAAGAACTTGANGAACTTCGGGATCGATATGCCNATCTGGAATCCCGC
TATCGGCGCCTAGCTCAAGAGCACACAACCTTACTTCTCTGCNAGGTGTTCACGATAGCCCGCTACATCGAGAGCGGGAG
GATGGGCAGGATCCGTCGGAAGCGNNCGNTNNNNNNNNANCNCNNCNNNNCCCNNNCNNNNNNNNGNGCCACCCGTCACT
TGCACCGGTGGAATAGCTCGCCGCTGCACCTCGATCTCCGCCACCTTCGGCCCCGACCGCCGGCGAAGATTTGGATGAGG
GAGATCTCGGAGGCGATGGCCCGGTCGAGCAAGGGCGACAGCGGGGCCAGCAGCGCGCTCCCCCTACCGAGCCGACGTCG
TTCCCTCCGCCCCTCCTCCCGTCCTCCGCCCGTCGCTTCCTTTGCTGTCGGCGGCTGCCAGTGGGGCGGAGCGGTGGCGG
ACAAGGGCGACGTGGAGGCGCAGGGCTCGGAGCGGCGGCGGATTGTGGGGACCACGTCGCAGCGGAGCACTCGTGCACCA
ATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis