Browse Element(s) Details


OsAffx.20640.1.S1_x_at

Description gb:NM_195311.1
DB_XREF= gi:37531981
TID=OsAffx.20640.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0005F01.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1164011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11560Os.24831.1.S1_x_at8/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_x_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_s_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.55127.1.S1_at1/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11570OsAffx.20020.1.S1_x_at1/1110+6166843..6168586hypothetical protein
LOC_Os10g11580Os.16301.1.S1_at11/1110+6169665..6170947Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os10g11590OsAffx.20641.1.S1_at11/1110+6174358..6175232hypothetical protein
LOC_Os10g11600OsAffx.18226.2.S1_at11/1110+6177974..6178375hypothetical protein
LOC_Os10g11610OsAffx.18226.1.S1_at7/1110+6178786..6179394hypothetical protein
LOC_Os10g11620OsAffx.30391.1.S1_at11/1110+6179930..6184650hypothetical protein
LOC_Os10g11630NANA10+6186187..6186393hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_x_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11650Os.27435.1.S1_x_at5/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11650Os.46334.1.S1_x_at3/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.2.S1_at11/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.1.S1_at3/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.4.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660Os.26886.3.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11666NANA10+6203287..6205189retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11672NANA10+6205445..6209953retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20640.1.S1_x_at--189--3311Chr10:6187387..6187411 (25 bp)
CACAACGGCGTTGCGGAGGAGCTCT
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--879--10691Chr10:6187397..6187421 (25 bp)
TTGCGGAGGAGCTCTAGCTCTGCCA
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--86--4371Chr10:6187419..6187443 (25 bp)
CCACTCCGAGGCCATGATGAAGTTG
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--341--991Chr10:6187444..6187468 (25 bp)
AGGAGGCAGCTTCTTGCGCCAGTTA
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--874--1551Chr10:6187451..6187475 (25 bp)
AGCTTCTTGCGCCAGTTATCGAGGT
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--96--10711Chr10:6187457..6187481 (25 bp)
TTGCGCCAGTTATCGAGGTCAGAGA
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--1014--10431Chr10:6187504..6187528 (25 bp)
TTAGGGACGAGATGCACAATGCCGC
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--373--3191Chr10:6187520..6187544 (25 bp)
CAATGCCGCCGGTCTCAGGGAGGAT
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--50--31Chr10:6187629..6187653 (25 bp)
ATTGGCGCGTGGCACCACTCTGGAT
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--243--4671Chr10:6187635..6187659 (25 bp)
GCGTGGCACCACTCTGGATCTGAGG
LOC_Os10g11640
OsAffx.20640.1.S1_x_at--369--10691Chr10:6187709..6187733 (25 bp)
TTGCCAGCCGCCCAGGCGAGCTTTG
LOC_Os10g11640
Target Sequence 
CACAACGGCGTTGCGGAGGAGCTCTAGCTCTGCCACTCCGAGGCCATGATGAAGTTGAGGAGGCAGCTTCTTGCGCCAGT
TATCGAGGTCAGAGAGGACGGGGAAAAGCGATGGAGGTTAGGGACGAGATGCACAATGCCGCCGGTCTCAGGGAGGATGG
AAGGGGCAGCGGCGACATCCTCCTCCCATCGCTACACTGCCTGCCACCACACGTCGCCCCATTGCTGTCACCCTTCTCCC
ACATTGGCGCGTGGCACCACTCTGGATCTGAGGCCGCCTGGTCCGCCTCAGCCACCGGTCACCGGGGCATGCTCCGCCTC
CGTTGCCAGCCGCCCAGGCGAGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20640.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis