Browse Element(s) Details


Os.52905.1.S1_at

Description gb:AK069835.1
DB_XREF= gi:32979859
TID=Os.52905.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031O05, full insert sequence.
FL= gb:AK070209.1 gb:AK069835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1055011/11cyclin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10530Os.6633.1.S1_at11/117+5680311..5683565Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g10540Os.25261.1.S1_at11/117+5690180..5698183aminopeptidase P, cytosolic, putative, expressed
LOC_Os07g10550Os.52905.1.S2_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10550Os.52905.1.S1_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52905.1.S1_at--244--5411Chr07:5705230..5705254 (25 bp)
GAAGCTCTGTTTCATCAGTTGCTCT
LOC_Os07g10550
Os.52905.1.S1_at--277--4951Chr07:5705160..5705184 (25 bp)
GCATTTTCGCTATTGTCTTGGTCCC
LOC_Os07g10550
Os.52905.1.S1_at--283--1331Chr07:5705073..5705097 (25 bp)
AGAGGACACTCTCTAGGGCTGTCTC
LOC_Os07g10550
Os.52905.1.S1_at--260--7171Chr07:5705053..5705077 (25 bp)
GTCTCGGTGTTTTCATCTTCAGCTG
LOC_Os07g10550
Os.52905.1.S1_at--204--8951Chr07:5704928..5704952 (25 bp)
TTCGAACCTACCTGTGTCTCAAAGT
LOC_Os07g10550
Os.52905.1.S1_at--1133--691Chr07:5704846..5704870 (25 bp)
ATGAGAGCTCCTTCAGTAGCCCTGA
LOC_Os07g10550
Os.52905.1.S1_at--54--9891Chr07:5704796..5704820 (25 bp)
TACTTCGATGTCTTTGAGAGCACCT
LOC_Os07g10550
Os.52905.1.S1_at--469--6011Chr07:5704781..5704805 (25 bp)
GAGAGCACCTTCCATGTCTATAAAG
LOC_Os07g10550
Os.52905.1.S1_at--229--7911Chr07:5704747..5704771 (25 bp)
GGTTCCTCAAGCCATCCAGAAGATG
LOC_Os07g10550
Os.52905.1.S1_at--403--5411Chr07:5704613..5704637 (25 bp)
GAAGCTGAGCAGTCGCCAGATCACA
LOC_Os07g10550
Os.52905.1.S1_at--916--3431Chr07:5704597..5704621 (25 bp)
CAGATCACACTTTTGCTTTCATCCA
LOC_Os07g10550
Target Sequence 
GAAGCTCTGTTTCATCAGTTGCTCTTAACGATGATCCACCCNGATCATGAAGCTCGAGTAGCTGCGCACCGCATTTTCGC
TATTGTCTTGGTCCCCTCTTCCGTTGCCCCCTCGATTCAAGCAAGTGTATCAGGTCAGGCTAAGAAACATGACATGCAGA
GGACACTCTCTAGGGCTGTCTCGGTGTTTTCATCTTCAGCTGCCATCTTTGACAAGTTGAAAAAGGACAAGCACTCAGAC
AACTCACAAGGTGATAGCAGTGGCTTGCATAGTATCAGTGAAGAGTCTAGTAATGCCAAACGTTCGAACCTACCTGTGTC
TCAAAGTCGCCGACGTAGCATGAAAATTCCTAATTTTTCCATGAAGAGGGGTCCTTCAATGGCTATGAGAGCTCCTTCAG
TAGCCCTGAGAGCCCCTTCCATATCTCTCAGAGTTACTTCGATGTCTTTGAGAGCACCTTCCATGTCTATAAAGGCAGAC
CATGGTTCCTCAAGCCATCCAGAAGATGAAATGGAATCAGTTTTGCTGAAGCTGAGCAGTCGCCAGATCACACTTTTGCT
TTCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis