Browse Element(s) Details


Os.52916.1.A1_at

Description gb:AK069895.1
DB_XREF= gi:32979919
TID=Os.52916.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039B22, full insert sequence.
FL= gb:AK069895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1777011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17750Os.49340.1.S1_at10/119+10848768..10852195oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g17760Os.24591.1.S1_at11/119+10855526..10861748expressed protein
LOC_Os09g17770Os.52916.1.A1_at11/119+10871550..10876952expressed protein
LOC_Os09g17780NANA9+10879282..10880268retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17790OsAffx.29900.1.S1_at10/119+10882558..10883604hypothetical protein
LOC_Os09g17800NANA9+10884616..10889039retrotransposon protein, putative, unclassified
LOC_Os09g17810Os.52715.1.S1_at11/119+10897051..10899226expressed protein
LOC_Os09g17820OsAffx.29901.1.S1_at11/119+10899665..10900382hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52916.1.A1_at--507--2911Chr09:10872459..10872483 (25 bp)
AAGGAGACCTTGTCCTCTGTTTCAA
LOC_Os09g17770
Os.52916.1.A1_at--858--5391Chr09:10872246..10872270 (25 bp)
GAAGCATTGCATTTCGATGCGCATG
LOC_Os09g17770
Os.52916.1.A1_at--174--9391Chr09:10872233..10872257 (25 bp)
TCGATGCGCATGTTCTGGAAATCCA
LOC_Os09g17770
Os.52916.1.A1_at--266--1311Chr09:10872180..10872204 (25 bp)
AGATGTGTCTTCCTTGTCGAATACG
LOC_Os09g17770
Os.52916.1.A1_at--440--8451Chr09:10871949..10871973 (25 bp)
GGCCAAAGCACTCCTGATGGCTTGT
LOC_Os09g17770
Os.52916.1.A1_at--1107--8731Chr09:10871917..10871941 (25 bp)
TGTCAAATACACATCTGCCTCTTGC
LOC_Os09g17770
Os.52916.1.A1_at--971--9171Chr09:10871888..10871912 (25 bp)
TGCCGTATGCGCTAATGCTGAACTA
LOC_Os09g17770
Os.52916.1.A1_at--190--7551Chr09:10871840..10871864 (25 bp)
GGGCTAAACTTTTTGCTTGGTTCAG
LOC_Os09g17770
Os.52916.1.A1_at--582--6251Chr09:10871775..10871799 (25 bp)
GATGGTACATTTCAACCCTCTTTGG
LOC_Os09g17770
Os.52916.1.A1_at--291--4271Chr09:10871759..10871783 (25 bp)
CCTCTTTGGCAAATTCCGAACCTAG
LOC_Os09g17770
Os.52916.1.A1_at--726--3151Chr09:10871563..10871587 (25 bp)
AATTCGTAATGCTCAGCGTTCTCGG
LOC_Os09g17770
Target Sequence 
AAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGG
AAACAACANGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCT
GAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTG
CCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTG
ATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGC
TGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGA
AGAGCATANTACCTCCAAGAACTAACAGGATTGGACTTTTTAAATGCGTTGTGTTGGGTGTGAGATTCCACATTTCCATG
GAAAATTCGTAATGCTCAGCGTTCTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52916.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis