Browse Element(s) Details


Os.5294.1.S1_at

Description gb:AK070994.1
DB_XREF= gi:32981017
TID=Os.5294.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080H04, full insert sequence.
FL= gb:AK070994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5341011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein
LOC_Os04g53390OsAffx.4165.1.S1_at11/114+31582871..31584169BTB/POZ domain containing protein
LOC_Os04g53400OsAffx.4166.1.S1_at11/114+31590645..31591772BTB/POZ domain containing protein
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein
LOC_Os04g53430OsAffx.14396.1.S1_at11/114+31598562..31599683BTB/POZ domain containing protein, expressed
LOC_Os04g53440Os.27752.1.S1_at11/114+31600401..31604418RNA Binding Protein 45, putative, expressed
LOC_Os04g53450Os.53152.1.S1_at11/114+31605034..31609789expressed protein
LOC_Os04g53460Os.27353.1.S1_at11/114+31612182..31617391AT hook motif family protein, expressed
LOC_Os04g53470Os.10020.1.S1_at10/114+31619083..31622988expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5294.1.S1_at--556--3011Chr04:31593758..31593782 (25 bp)
AATGCAGCACTTGCTAGTTGCCGCG
LOC_Os04g53410
Os.5294.1.S1_at--667--8351Chr04:31593823..31593847 (25 bp)
GGCGGCTCAGCGAAACCATTGATGT
LOC_Os04g53410
Os.5294.1.S1_at--454--1431Chr04:31593878..31593902 (25 bp)
AGAACAACATCACTGCTCGCAGCTG
LOC_Os04g53410
Os.5294.1.S1_at--343--3791Chr04:31593893..31593917 (25 bp)
CTCGCAGCTGAGACAGGCTTGCATT
LOC_Os04g53410
Os.5294.1.S1_at--269--4931Chr04:31593909..31593933 (25 bp)
GCTTGCATTGGGTTTGTGGCATCTC
LOC_Os04g53410
Os.5294.1.S1_at--191--8671Chr04:31593923..31593947 (25 bp)
TGTGGCATCTCCAAACATGCTTGGG
LOC_Os04g53410
Os.5294.1.S1_at--1159--1411Chr04:31593983..31594007 (25 bp)
AGAAAGCTGCCCGTTGATTATGAAG
LOC_Os04g53410
Os.5294.1.S1_at--713--6791Chr04:31594118..31594142 (25 bp)
GTTATCTACATCTCTATATGCGACT
LOC_Os04g53410
Os.5294.1.S1_at--463--8851Chr04:31594162..31594186 (25 bp)
TGATCCTTCCAACGCCTAATATGTA
LOC_Os04g53410
Os.5294.1.S1_at--497--831Chr04:31594210..31594234 (25 bp)
ATGGATGACTCCTTAGCACCATGGT
LOC_Os04g53410
Os.5294.1.S1_at--466--7931Chr04:31594279..31594303 (25 bp)
GGATTTACTCTATACTCACATGCTT
LOC_Os04g53410
Target Sequence 
AATGCAGCACTTGCTAGTTGCCGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAA
CCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATT
GGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTT
GATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTT
TTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGT
TGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTA
AGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCACATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis