Browse Element(s) Details


Os.52940.1.S1_at

Description gb:AK070021.1
DB_XREF= gi:32980045
TID=Os.52940.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038B22, full insert sequence.
FL= gb:AK070021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0560011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05550Os.10665.1.S1_at11/1112+2545330..2546900sialyltransferase, putative, expressed
LOC_Os12g05560OsAffx.7491.1.S1_x_at11/1112+2550195..2550440hypothetical protein
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein
LOC_Os12g05590Os.57548.1.S1_at11/1112+2564215..2565564CENTRORADIALIS, putative, expressed
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52940.1.S1_at--404--7931Chr12:2572029..2572053 (25 bp)
GGATTGCACACAACATGCCATCTTT
LOC_Os12g05600
Os.52940.1.S1_at--455--2191Chr12:2572527..2572551 (25 bp)
ACACATCGTGATTTGCTTGTTGCTT
LOC_Os12g05600
Os.52940.1.S1_at--990--6131Chr12:2572605..2572629 (25 bp)
GAGGGTTCTGTACACATCTGGCAAG
LOC_Os12g05600
Os.52940.1.S1_at--836--5891Chr12:2572656..2572680 (25 bp)
GAGCTGCAACGGTACATTGCCCAGA
LOC_Os12g05600
Os.52940.1.S1_at--103--1331Chr12:2572678..2572702 (25 bp)
AGAGGCTTCCTTGGATCCAGTATCA
LOC_Os12g05600
Os.52940.1.S1_at--937--7971Chr12:2572690..2572714 (25 bp)
GGATCCAGTATCATGAATTCCCTGA
LOC_Os12g05600
Os.52940.1.S1_at--1051--971Chr12:2572715..2572739 (25 bp)
AGGAGGACACATGTTCATGCTGGTA
LOC_Os12g05600
Os.52940.1.S1_at--69--5632Chr12:2572752..2572776 (25 bp)
GACAAAATCATCAGAGCGCTCTTGG
LOC_Os12g05600
Os.52940.1.S1_at--719--4571Chr12:2572767..2572791 (25 bp)
GCGCTCTTGGTTGGAGAACAGCTCT
LOC_Os12g05600
Os.52940.1.S1_at--923--5491Chr12:2572782..2572806 (25 bp)
GAACAGCTCTGAAGTCTCATCAAAT
LOC_Os12g05600
Os.52940.1.S1_at--957--3291Chr12:2572802..2572826 (25 bp)
CAAATCATTCTGTGCTTGTTAGCTT
LOC_Os12g05600
Target Sequence 
GGATTGCACACAACATGCCATCTTTGCTCTACCNGTGGATGANCCNAAAGTGGCTCCCTTCTNCTGCGGCAGCCATGCGC
CACCCTGAAATATTCANCAAGCATGNATTTGGAGGNTCTTCAGANNATGATGGCAATGCCTCTNATTGAGAATAAATCTA
GGCAGCAAGGCATTTATGAATCAACACATCGTGATTTGCTTGTTGCTTTTGGAAAGTGGGAGTTTGATCCAATGAATATT
ACCAATCCATTTCCTCANAATGAGGGTTCTGTACACATCTGGCAAGGTTATGAAGACAGGTTGGTGCTGGTTGAGCTGCA
ACGGTACATTGCCCAGAGGCTTCCTTGGATCCAGTATCATGAATTCCCTGAAGGAGGACACATGTTCATGCTGGTAGATG
GATGGACTGACAAAATCATCAGAGCGCTCTTGGTTGGAGAACAGCTCTGAAGTCTCATCAAATCATTCTGTGCTTGTTAG
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis