Browse Element(s) Details


Os.52964.1.S1_at

Description gb:AK070156.1
DB_XREF= gi:32980180
TID=Os.52964.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043D23, full insert sequence.
FL= gb:AK070156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1346011/11Jasmonate O-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13430NANA6+7387963..7392345retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13440OsAffx.4828.1.S1_at11/116+7396013..7396463hypothetical protein
LOC_Os06g13450OsAffx.15408.1.S1_at10/116+7400128..7403268Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os06g13460Os.52964.1.S1_at11/116+7405038..7407610Jasmonate O-methyltransferase, putative, expressed
LOC_Os06g13470OsAffx.27612.1.S1_at11/116+7416745..7421148SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13480OsAffx.27613.1.S1_at11/116+7422690..7423046hypothetical protein
LOC_Os06g13490OsAffx.15409.1.S1_at11/116+7428731..7432792SAM dependent carboxyl methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52964.1.S1_at--404--6751Chr06:7405512..7405536 (25 bp)
GTTCATGACATTGCCAGCAGTAGCC
LOC_Os06g13460
Os.52964.1.S1_at--194--1691Chr06:7405491..7405515 (25 bp)
AGCCAAAATATCACTACGGGCATTA
LOC_Os06g13460
Os.52964.1.S1_at--386--8291Chr06:7405473..7405497 (25 bp)
GGCATTAGATCTGTGCTGGAGTCTT
LOC_Os06g13460
Os.52964.1.S1_at--1079--2331Chr06:7405427..7405451 (25 bp)
AAAGCATACTTGACGTGTTGTTTCA
LOC_Os06g13460
Os.52964.1.S1_at--575--3291Chr06:7405358..7405382 (25 bp)
CAAAGTATGCCGTCATCGTCATGTC
LOC_Os06g13460
Os.52964.1.S1_at--430--4231Chr06:7405349..7405373 (25 bp)
CCGTCATCGTCATGTCCTTGAAGAA
LOC_Os06g13460
Os.52964.1.S1_at--629--9991Chr06:7405317..7405341 (25 bp)
TAGCACGTGTGGTCCATGAATGTCC
LOC_Os06g13460
Os.52964.1.S1_at--775--651Chr06:7405302..7405326 (25 bp)
ATGAATGTCCTCTCTCTTAATTACG
LOC_Os06g13460
Os.52964.1.S1_at--124--4191Chr06:7405205..7405229 (25 bp)
CCCTCCTTTCAACCATTTGCAATAT
LOC_Os06g13460
Os.52964.1.S1_at--412--51Chr06:7405141..7405165 (25 bp)
ATTGTTTCTCCATTGTTTAGCTATA
LOC_Os06g13460
Os.52964.1.S1_at--630--10111Chr06:7405116..7405140 (25 bp)
TATGGTGTTTGGTTACTTGGCTATA
LOC_Os06g13460
Target Sequence 
GTTCATGACATTGCCAGCAGTAGCCAAAATATCACTACGGGCATTAGATCTGTGCTGGAGTCTTTGATAGCAAGTCATTT
TGGAGAAAGCATACTTGACGTGTTGTTTCAAGAGTTTAGACCCCTTGTGGCCCAACACCTTGAGAGGGAGAAGACAAAGT
ATGCCGTCATCGTCATGTCCTTGAAGAAAATATAGTAGCACGTGTGGTCCATGAATGTCCTCTCTCTTAATTACGAGATG
CTTTTAAAGAGATCAAACACAATATGGTGACATATATCGTAATAAGAACACTTGTGTGGTTTTGTTTCCCTCCTTTCAAC
CATTTGCAATATTGCATAATGCTCATATTCTGTAAAACTCTAGCTAAATGGATTGTTTCTCCATTGTTTAGCTATATATG
GTGTTTGGTTACTTGGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis