Browse Element(s) Details


Os.53015.1.S1_at

Description gb:AK070441.1
DB_XREF= gi:32980465
TID=Os.53015.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53015 (NCBI UniGene Cluster)
UG_TITLE=Heat-shock protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023053N20, full insert sequence.
FL= gb:AK100011.1 gb:AK070441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2039410/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20360Os.7989.1.S1_at9/112+11997094..12002615tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g20370OsAffx.24345.1.S1_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.24345.1.S1_x_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.13996.1.S1_x_at1/112+12004894..12005217hypothetical protein
LOC_Os02g20380Os.7532.1.S1_at11/112+12009030..12015471expressed protein
LOC_Os02g20394OsAffx.12131.1.S1_at11/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20394Os.53015.1.S1_at10/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20410Os.25204.1.S1_at11/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20410Os.5767.1.S1_at1/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20420OsAffx.12134.1.S1_at3/112+12039379..12052089retrotransposon protein, putative, LINE subclass
LOC_Os02g20420OsAffx.12133.1.S1_at1/112+12039379..12052089retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53015.1.S1_at--875--1451Chr02:12022847..12022871 (25 bp)
AGAAGATTTCCTTGGCTGAGGCCTT
LOC_Os02g20394
Os.53015.1.S1_at--981--9811Chr02:12022892..12022916 (25 bp)
TAACAGCACTAGATGGTCGGAACCT
LOC_Os02g20394
Os.53015.1.S1_at--93--3091Chr02:12022926..12022950 (25 bp)
AATCAATAATGTCGTCTACCCTGGC
LOC_Os02g20394
Os.53015.1.S1_at--916--10791Chr02:12022961..12022985 (25 bp)
TTGTTCTCCGAGAGGGCATGCCAAT
LOC_Os02g20394
Os.53015.1.S1_at--234--6211Chr02:12023079..12023103 (25 bp)
GAGGCTACTAGCTTCTTGAGGAACA
LOC_Os02g20394
Os.53015.1.S1_at--543--8671Chr02:12023201..12023225 (25 bp)
TGTGGGTTCTGGTTATTCCACCTTT
LOC_Os02g20394
Os.53015.1.S1_at--669--2491Chr02:12023284..12023308 (25 bp)
AACATGCCGTGCTTATGTGTGCCAT
LOC_Os02g20394
Os.53015.1.S1_at--213--8711Chr02:12023301..12023325 (25 bp)
TGTGCCATCTCCTACTGAGCAGAGG
LOC_Os02g20394
Os.53015.1.S1_at--790--5411Chr02:12023336..12023360 (25 bp)
GAAGCCGCAGTTCCAAACTCTGTTT
LOC_Os02g20394
Os.53015.1.S1_at--218--9911Chr02:12023375..12023399 (25 bp)
TACTGGACTGCAGAGGGTACCCCTG
LOC_Os02g20394
Os.53015.1.S1_at--823--8891NONE
TGAGTATTTCTCGTCCTTGCTGGGC
NONE
Target Sequence 
AGAAGATTTCCTTGGCTGAGGCCTTGACAGGATGTACAGTTCAGGTAACAGCACTAGATGGTCGGAACCTAACAGTACCA
ATCAATAATGTCGTCTACCCTGGCTACGAGGAGGTTGTTCTCCGAGAGGGCATGCCAATTCCGAAGGATCCATCAAAGAA
GGGAAATCTTAGGATCAAGTTCAACATCAAATTCCCCTCAAGGCTGACGTCTGAGCAGAAATCAGAAATTAAGAGGCTAC
TAGCTTCTTGAGGAACACAATATACCGTTAGGTTGTCTGGTTTTTTGGGTGCACTGGGGAGACCAATCAGATGTTAAGCT
GGGAAATGTGAATACCATCCAAAGACTCATTTTTTGTGGGTTCTGGTTATTCCACCTTTGTAACTTAAAATTGTCAATTT
TGGCAGAATAATTCATCAAAATAGATAATTCTGTGTCAACATGCCGTGCTTATGTGTGCCATCTCCTACTGAGCAGAGGC
TATCAAAATGAAGCCGCAGTTCCAAACTCTGTTTTTTTTTCTTTTTTGTACTGGACTGCAGAGGGTACCCCTGGTTATAT
TTTGAGTATTTCTCGTCCTTGCTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis