Browse Element(s) Details


OsAffx.12134.1.S1_at

Description tigr:9630.m01960
TID=OsAffx.12134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2048011/11resistance protein, putative
LOC_Os02g204203/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20430Os.46280.1.A1_at6/112+12052019..12057368DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g20430Os.20081.1.S1_x_at6/112+12052019..12057368DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g20440Os.27347.3.S1_at4/112+12058720..12061500hypothetical protein
LOC_Os02g20440Os.46440.1.A1_s_at3/112+12058720..12061500hypothetical protein
LOC_Os02g20450OsAffx.12132.1.S1_at11/112+12064009..12064783hypothetical protein
LOC_Os02g20460OsAffx.12133.1.S1_at11/112+12065351..12068629Leucine Rich Repeat family protein
LOC_Os02g20470Os.28346.3.S1_x_at9/112+12070695..12076466retrotransposon protein, putative, unclassified
LOC_Os02g20480OsAffx.12134.1.S1_at11/112+12079373..12079954resistance protein, putative
LOC_Os02g20490Os.51211.1.S1_at11/112+12086013..12089345expressed protein
LOC_Os02g20500OsAffx.2696.1.S1_x_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20500OsAffx.2696.1.S1_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20510OsAffx.2697.1.S1_at11/112+12100867..12101382hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12134.1.S1_at--1157--5752Chr02:12079876..12079900 (25 bp)
GACGTGCTTGTCCAGAAAGTCACCC
LOC_Os02g20480
OsAffx.12134.1.S1_at--1062--2832Chr02:12079860..12079884 (25 bp)
AAGTCACCCGCATGTATGGCGTCGA
LOC_Os02g20480
OsAffx.12134.1.S1_at--423--891Chr02:12079725..12079749 (25 bp)
AGGCCGATGACATGCTCAACGAGTT
LOC_Os02g20480
OsAffx.12134.1.S1_at--136--4471Chr02:12079668..12079692 (25 bp)
GCCTCGAGTCACTGGGACACAAGGT
LOC_Os02g20480
OsAffx.12134.1.S1_at--859--2891Chr02:12079648..12079672 (25 bp)
AAGGTACGAAGCTGCATGACCCCAC
LOC_Os02g20480
OsAffx.12134.1.S1_at--139--1691Chr02:12079625..12079649 (25 bp)
ACTCGAGTTCCGTTTTACCATGAGC
LOC_Os02g20480
OsAffx.12134.1.S1_at--395--6031Chr02:12079555..12079579 (25 bp)
GAGATGAACATGTTTGGCCTGTTGC
LOC_Os02g20480
OsAffx.12134.1.S1_at--509--8911Chr02:12079523..12079547 (25 bp)
TGAGCCAGTACATCAACTTCCTTAC
LOC_Os02g20480
OsAffx.12134.1.S1_at--940--3631Chr02:12079507..12079531 (25 bp)
CTTCCTTACTGGCAGACGTACTCAG
LOC_Os02g20480
OsAffx.12134.1.S1_at--624--1892Chr02:12079492..12079516 (25 bp)
ACGTACTCAGTGCTGCCATCAAATG
LOC_Os02g20480
OsAffx.12134.1.S1_at--958--7731Chr02:12079427..12079451 (25 bp)
GGTGGTGATCAAACTGTTGCTCGAT
LOC_Os02g20480
Target Sequence 
GACGTGCTTGTCCAGAAAGTCACCCGCATGTATGGCGTCGACGGCGACCGCCCTAAGCTAGAGCGGCAGCTGCTGGCGGA
CGCCGAGTTGAAGAGCGAGACCAACCCCGCCATCAAGCGTTGGATGAAAGACCTCAACGCCGCCGCCGACGAGGCCGATG
ACATGCTCAACGAGTTCCAGTACGAGGCGCTGCGCCGCGAGGCCATGAGCCTCGAGTCACTGGGACACAAGGTACGAAGC
TGCATGACCCCACTCGAGTTCCGTTTTACCATGAGCAGGAAGCTTGCCAAAGTGCTCAAGAACATCAACGAGCTGGTTGA
AGAGATGAACATGTTTGGCCTGTTGCTGCAAGATGAGCCAGTACATCAACTTCCTTACTGGCAGACGTACTCAGTGCTGC
CATCAAATGAATTAGATGATATCTTTGGCAGAGACGACGACAAGGAGGCGGTGGTGATCAAACTGTTGCTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis