Browse Element(s) Details


OsAffx.12133.1.S1_at

Description tigr:9630.m01958
TID=OsAffx.12133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2046011/11Leucine Rich Repeat family protein
LOC_Os02g204201/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20420OsAffx.12134.1.S1_at3/112+12039379..12052089retrotransposon protein, putative, LINE subclass
LOC_Os02g20420OsAffx.12133.1.S1_at1/112+12039379..12052089retrotransposon protein, putative, LINE subclass
LOC_Os02g20430Os.46280.1.A1_at6/112+12052019..12057368DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g20430Os.20081.1.S1_x_at6/112+12052019..12057368DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g20440Os.27347.3.S1_at4/112+12058720..12061500hypothetical protein
LOC_Os02g20440Os.46440.1.A1_s_at3/112+12058720..12061500hypothetical protein
LOC_Os02g20450OsAffx.12132.1.S1_at11/112+12064009..12064783hypothetical protein
LOC_Os02g20460OsAffx.12133.1.S1_at11/112+12065351..12068629Leucine Rich Repeat family protein
LOC_Os02g20470Os.28346.3.S1_x_at9/112+12070695..12076466retrotransposon protein, putative, unclassified
LOC_Os02g20480OsAffx.12134.1.S1_at11/112+12079373..12079954resistance protein, putative
LOC_Os02g20490Os.51211.1.S1_at11/112+12086013..12089345expressed protein
LOC_Os02g20500OsAffx.2696.1.S1_x_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20500OsAffx.2696.1.S1_at11/112+12089710..12091108hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12133.1.S1_at--450--10191Chr02:12065874..12065898 (25 bp)
TATATGGCCTCAACTTCTTCACAGC
LOC_Os02g20460
OsAffx.12133.1.S1_at--754--3391Chr02:12065853..12065877 (25 bp)
CAGCTGCATCCGGTTTATCCAAAAT
LOC_Os02g20460
OsAffx.12133.1.S1_at--295--5151Chr02:12065772..12065796 (25 bp)
GCAACGACCTTGTGCATTGGCCAAT
LOC_Os02g20460
OsAffx.12133.1.S1_at--455--9392Chr02:12065720..12065744 (25 bp)
TCGATCCCTGTCTATTGAACACTGT
LOC_Os02g20460
OsAffx.12133.1.S1_at--698--5591Chr02:12065662..12065686 (25 bp)
GAAATCATGCCACTCTACTATCTAG
LOC_Os02g20460
OsAffx.12133.1.S1_at--503--31Chr02:12065606..12065630 (25 bp)
ATTGGATATTCCGACGATGCCTGCA
LOC_Os02g20460
OsAffx.12133.1.S1_at--881--591Chr02:12065590..12065614 (25 bp)
ATGCCTGCATCCCTTGAGGAGCTGT
LOC_Os02g20460
OsAffx.12133.1.S1_at--932--6171Chr02:12065575..12065599 (25 bp)
GAGGAGCTGTGTCTGCTACTTTGCC
LOC_Os02g20460
OsAffx.12133.1.S1_at--622--1211Chr02:12065494..12065518 (25 bp)
AGTTTTGAGCACTGTCATGACCTGA
LOC_Os02g20460
OsAffx.12133.1.S1_at--90--6231Chr02:12065449..12065473 (25 bp)
GATGGCCTTATTTCCCTTGAAGAAT
LOC_Os02g20460
OsAffx.12133.1.S1_at--436--1351Chr02:12065398..12065422 (25 bp)
AGAGAGATTTCCACAGGGTCTCCTC
LOC_Os02g20460
Target Sequence 
TATATGGCCTCAACTTCTTCACAGCTGCATCCGGTTTATCCAAAATGCATCTTGGGCTATGGAAATGCTTTGCCTTTGTG
GAGGATTTGTGTATTGGTGCATGCAACGACCTTGTGCATTGGCCAATGGAGGAGCTCATGAGCTTGATTCACCTTCGATC
CCTGTCTATTGAACACTGTGATAACCTTGAAGGAAAGGGTTCATCATCGGAGGAAATCATGCCACTCTACTATCTAGAGA
AGTTTCACATCAAAGACTGCAAAAGTCTATTGGATATTCCGACGATGCCTGCATCCCTTGAGGAGCTGTGTCTGCTACTT
TGCCCCAGATTAGTGGCACTGCCTTCGAACCTTGGAAATTTGGCCAGGCTAAAGACTATGAGTTTTGAGCACTGTCATGA
CCTGAAAGAGTTGCCTGATGGGATGGATGGCCTTATTTCCCTTGAAGAATTGAAGATTATGGGGGTGCCCAGAGATAGAG
AGATTTCCACAGGGTCTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis