Browse Element(s) Details


OsAffx.2696.1.S1_x_at

Description tigr:9630.m01962
TID=OsAffx.2696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2050011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20450OsAffx.12132.1.S1_at11/112+12064009..12064783hypothetical protein
LOC_Os02g20460OsAffx.12133.1.S1_at11/112+12065351..12068629Leucine Rich Repeat family protein
LOC_Os02g20470Os.28346.3.S1_x_at9/112+12070695..12076466retrotransposon protein, putative, unclassified
LOC_Os02g20480OsAffx.12134.1.S1_at11/112+12079373..12079954resistance protein, putative
LOC_Os02g20490Os.51211.1.S1_at11/112+12086013..12089345expressed protein
LOC_Os02g20500OsAffx.2696.1.S1_x_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20500OsAffx.2696.1.S1_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20510OsAffx.2697.1.S1_at11/112+12100867..12101382hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20530OsAffx.12136.1.S1_at11/112+12106516..12110223hypothetical protein
LOC_Os02g20540Os.14430.1.S1_at11/112+12113917..12114962Fasciclin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2696.1.S1_x_at--1111--7711Chr02:12090378..12090402 (25 bp)
GGTGGTACTCCTTCCGCGCCAGGGA
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--389--4011Chr02:12090324..12090348 (25 bp)
CGTCCTCCGTCAAGGCGTGGAAGGA
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--902--8191Chr02:12090306..12090330 (25 bp)
GGAAGGAGGAGTTCCTCTTCGTCTC
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--490--2931Chr02:12090159..12090183 (25 bp)
AAGGCGTCGTCGACCTCAAGACCTA
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--399--1731Chr02:12090147..12090171 (25 bp)
ACCTCAAGACCTACCTCTCGGAGAG
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--904--9951Chr02:12090136..12090160 (25 bp)
TACCTCTCGGAGAGCAACCTCGTCG
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--300--9071Chr02:12089897..12089921 (25 bp)
TGCTTCGGTCAGAGCTGCAGGCGAA
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--902--3471Chr02:12089880..12089904 (25 bp)
CAGGCGAAGGACAAGGCTCTGGCCA
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--246--4131Chr02:12089852..12089876 (25 bp)
CGCAGGGAGAGATCAGCCGCCTGAA
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--910--1271Chr02:12089843..12089867 (25 bp)
AGATCAGCCGCCTGAAGGCGCAGCT
LOC_Os02g20500
OsAffx.2696.1.S1_x_at--826--5011Chr02:12089749..12089773 (25 bp)
GCAGGTGCTCAAGTCTGATGGCGCC
LOC_Os02g20500
Target Sequence 
GGTGGTACTCCTTCCGCGCCAGGGAGAGCGTCCCCGCGCTGTTCACGGGCCTCCCGTCCTCCGTCAAGGCGTGGAAGGAG
GAGTTCCTCTTCGTCTCGCCGCCGCCCGCCGCGCCGTGGCGCTGCCCCGTGCGCTGGGGAACCCCGTCCAAGGAGGCCAC
GAGCGACCCGGCGCTCACCGAGAGGGAGGCCGCCGTGGCGCGGCGGCTCACGCAGGGCCAAGGCGTCGTCGACCTCAAGA
CCTACCTCTCGGAGAGCAACCTCGTCGCCGCCAAGATCAGCAGCGCCCCGGCATGTCTGGGAGGGACGGAAGCTTCACGG
GGTTCGTCGGTGGCGGCCGGGAAGAAGAGGAAGGTGCTGGGCGATGGCGTCAGCACCGGCGGTGGCGTGCTTCGGTCAGA
GCTGCAGGCGAAGGACAAGGCTCTGGCCAAGGCGCAGGGAGAGATCAGCCGCCTGAAGGCGCAGCTGGGGAGCGCCAAGG
CGAGGGAGCTGGAGGAGGCGAGGCAGGCGTTGGAGTACGAGCGGAAGCTGGGGACGCAGGTGCTCAAGTCTGATGGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2696.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis