Browse Element(s) Details


Os.51211.1.S1_at

Description gb:AK065304.1
DB_XREF= gi:32975322
TID=Os.51211.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002O01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002O01, full insert sequence.
FL= gb:AK065304.1 gb:AK061868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2049011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20440Os.27347.3.S1_at4/112+12058720..12061500hypothetical protein
LOC_Os02g20440Os.46440.1.A1_s_at3/112+12058720..12061500hypothetical protein
LOC_Os02g20450OsAffx.12132.1.S1_at11/112+12064009..12064783hypothetical protein
LOC_Os02g20460OsAffx.12133.1.S1_at11/112+12065351..12068629Leucine Rich Repeat family protein
LOC_Os02g20470Os.28346.3.S1_x_at9/112+12070695..12076466retrotransposon protein, putative, unclassified
LOC_Os02g20480OsAffx.12134.1.S1_at11/112+12079373..12079954resistance protein, putative
LOC_Os02g20490Os.51211.1.S1_at11/112+12086013..12089345expressed protein
LOC_Os02g20500OsAffx.2696.1.S1_x_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20500OsAffx.2696.1.S1_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20510OsAffx.2697.1.S1_at11/112+12100867..12101382hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20530OsAffx.12136.1.S1_at11/112+12106516..12110223hypothetical protein
LOC_Os02g20540Os.14430.1.S1_at11/112+12113917..12114962Fasciclin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51211.1.S1_at--595--9691Chr02:12088747..12088771 (25 bp)
TCACTTTTGCTTCTATCATGGGCGA
LOC_Os02g20490
Os.51211.1.S1_at--746--7571Chr02:12088766..12088790 (25 bp)
GGGCGATGACAATTCCAGCAGCGCT
LOC_Os02g20490
Os.51211.1.S1_at--867--5931Chr02:12088806..12088830 (25 bp)
GAGCAGTCCAACACAATGGCATCAT
LOC_Os02g20490
Os.51211.1.S1_at--1115--8271Chr02:12088823..12088847 (25 bp)
GGCATCATCTAATAGCTCCACAGAT
LOC_Os02g20490
Os.51211.1.S1_at--624--7591Chr02:12088960..12088984 (25 bp)
GGGCATTTAGTTTTCTCATCTTGAG
LOC_Os02g20490
Os.51211.1.S1_at--407--7631Chr02:12089093..12089117 (25 bp)
GGGACACTTTCTGATTGCAACTGGA
LOC_Os02g20490
Os.51211.1.S1_at--942--10231Chr02:12089126..12089150 (25 bp)
TTTGGCAGAATCTACCCTTGTACTT
LOC_Os02g20490
Os.51211.1.S1_at--625--2971Chr02:12089166..12089190 (25 bp)
AATGACCCTTTGCTGTGAAAATACC
LOC_Os02g20490
Os.51211.1.S1_at--200--2671Chr02:12089200..12089224 (25 bp)
AAGCCTGATGCTCGTGTTGTGTTCA
LOC_Os02g20490
Os.51211.1.S1_at--346--10111Chr02:12089261..12089285 (25 bp)
TATGGGCGCGGTTCACTTGTGGTTA
LOC_Os02g20490
Os.51211.1.S1_at--67--10831Chr02:12089277..12089301 (25 bp)
TTGTGGTTACCCAACTTGACCTTGC
LOC_Os02g20490
Target Sequence 
TCACTTTTGCTTCTATCATGGGCGATGACAATTCCAGCAGCGCTGCAGAGAAAATCAGTGAGCAGTCCAACACAATGGCA
TCATCTAATAGCTCCACAGATTCAACAAGTGACAACGAATCAACTAGCAATGATAAGAGTAAAGGGTAGCTGGAGTGGAC
CGTGCAAATGCANTAGCCAAATCNTGGAGTACATACAATTGGATAATCTTTGTGGGCATTTAGTTTTCTCATCTTGAGCT
GTAGTGTCATTGTATAGCGCAAATATGGACCAATTGAATTGCAATTACTGTAGTAACATTTCGGCTGAACATGTACAAAG
AAAAAAGGTAGCAAGCAGTTTTTTTGGGGACACTTTCTGATTGCAACTGGATGAATATTTTTGGCAGAATCTACCCTTGT
ACTTGTGGAATAACATTATAATGACCCTTTGCTGTGAAAATACCATCTTTTAGAAGCCTGATGCTCGTGTTGTGTTCATG
GAAGATGGCAGATTGCAGGGATATTTGGCGATAGTATGGGCGCGGTTCACTTGTGGTTACCCAACTTGACCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis