Browse Element(s) Details


Os.53022.1.S1_at

Description gb:AK070493.1
DB_XREF= gi:32980517
TID=Os.53022.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048L17, full insert sequence.
FL= gb:AK070493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3073011/11expressed protein
LOC_Os01g549901/11Auxin response factor 3, putative, expressed
LOC_Os01g161901/1126S proteasome non-ATPase regulatory subunit 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30690NANA5+17693166..17693381pentatricopeptide, putative
LOC_Os05g30700Os.8480.1.S1_at11/115+17698739..17700669expressed protein
LOC_Os05g30710Os.52883.1.S1_at11/115+17702381..17704833pentatricopeptide, putative, expressed
LOC_Os05g30720OsAffx.25435.1.S1_at2/115+17707057..17710121transposon protein, putative, unclassified
LOC_Os05g30730Os.53022.1.S1_at11/115+17712555..17713985expressed protein
LOC_Os05g30740OsAffx.14892.1.S1_at10/115+17721901..17722776C2 domain containing protein, expressed
LOC_Os05g30750Os.14652.1.S1_at11/115+17730985..17735251C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009850biological_processauxin metabolism
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010093biological_processspecification of floral organ identity
GO:0010150biological_processleaf senescence
GO:0010158biological_processabaxial cell fate specification
GO:0010227biological_processfloral organ abscission
GO:0030163biological_processprotein catabolism
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53022.1.S1_at--624--5631Chr05:17713409..17713433 (25 bp)
GACACCAAGCACACTGTGACTAAAA
LOC_Os05g30730
Os.53022.1.S1_at--491--171Chr05:17713385..17713409 (25 bp)
ATTTCTACAAGTGCTCAATTTTGGG
LOC_Os05g30730
Os.53022.1.S1_at--1001--8072Chr05:17713361..17713385 (25 bp)
GGAGCTGAAGTGCTGAACTCTTCCT
LOC_Os05g30730
Os.53022.1.S1_at--151--5471Chr05:17713347..17713371 (25 bp)
GAACTCTTCCTTGACCAATTACAGG
LOC_Os05g30730
Os.53022.1.S1_at--813--2511Chr05:17713239..17713263 (25 bp)
AACTTAACCTTGCTAGTATCACACA
LOC_Os05g30730
Os.53022.1.S1_at--999--9691Chr05:17713221..17713245 (25 bp)
TCACACAATTTTTCAGGCTTCCCTG
LOC_Os05g30730
Os.53022.1.S1_at--366--10511Chr05:17713210..17713234 (25 bp)
TTCAGGCTTCCCTGTATGTTTTTCT
LOC_Os05g30730
Os.53022.1.S1_at--31--6931Chr05:17713197..17713221 (25 bp)
GTATGTTTTTCTAACCTTGCTACCA
LOC_Os05g30730
Os.53022.1.S1_at--992--2631Chr05:17713185..17713209 (25 bp)
AACCTTGCTACCAAATCAGTATTTT
LOC_Os05g30730
Os.53022.1.S1_at--192--3452Chr01:9164344..9164635 (25 bp)
CAGTATTTTTACTTCCTTGGATGTC
LOC_Os01g16190
Os.53022.1.S1_at--922--7091Chr05:17713147..17713171 (25 bp)
GTCACATTTTCAGACTACCAAGCTG
LOC_Os05g30730
Target Sequence 
GACACCAAGCACACTGTGACTAAAATTTCTACAAGTGCTCAATTTTGGGGAGCTGAAGTGCTGAACTCTTCCTTGACCAA
TTACAGGGGATGCTTTCAGAATATGATAGGCATAAAATGGATCTTTGTTGGTTTCTTGGATTAGTTAAGTAAATGTTTCA
CTAGTTTTTTAACTTAACCTTGCTAGTATCACACAATTTTTCAGGCTTCCCTGTATGTTTTTCTAACCTTGCTACCAAAT
CAGTATTTTTACTTCCTTGGATGTCACATTTTCAGACTACCAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis