Browse Element(s) Details


Os.8480.1.S1_at

Description gb:AK064110.1
DB_XREF= gi:32974128
TID=Os.8480.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G07, full insert sequence.
FL= gb:AK064110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3070011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30650NANA5+17674564..17675954hypothetical protein
LOC_Os05g30660Os.53090.1.S1_at11/115+17675973..17678016expressed protein
LOC_Os05g30670OsAffx.27089.1.S1_at11/115+17680351..17681767hypothetical protein
LOC_Os05g30670OsAffx.25936.5.S1_x_at1/115+17680351..17681767hypothetical protein
LOC_Os05g30680Os.54160.1.S1_at11/115+17684726..17686491exocyst subunit EXO70 family protein, putative, expressed
LOC_Os05g30690NANA5+17693166..17693381pentatricopeptide, putative
LOC_Os05g30700Os.8480.1.S1_at11/115+17698739..17700669expressed protein
LOC_Os05g30710Os.52883.1.S1_at11/115+17702381..17704833pentatricopeptide, putative, expressed
LOC_Os05g30720OsAffx.25435.1.S1_at2/115+17707057..17710121transposon protein, putative, unclassified
LOC_Os05g30730Os.53022.1.S1_at11/115+17712555..17713985expressed protein
LOC_Os05g30740OsAffx.14892.1.S1_at10/115+17721901..17722776C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8480.1.S1_at--559--1391Chr05:17699878..17700101 (25 bp)
AGACCCTATCCTGAGCTAGCAAGAT
LOC_Os05g30700
Os.8480.1.S1_at--38--5611Chr05:17700194..17700218 (25 bp)
GACAAGGTTATTACTGGTCCTACTG
LOC_Os05g30700
Os.8480.1.S1_at--1024--9851Chr05:17700221..17700245 (25 bp)
TACAGAACATACCTGGAGGCCCATC
LOC_Os05g30700
Os.8480.1.S1_at--876--71Chr05:17700323..17700347 (25 bp)
ATTCCAGCTTCATATTGGCATGCCC
LOC_Os05g30700
Os.8480.1.S1_at--1111--8491Chr05:17700338..17700362 (25 bp)
TGGCATGCCCATTTATATATAGAGT
LOC_Os05g30700
Os.8480.1.S1_at--545--2411Chr05:17700403..17700427 (25 bp)
AAACAAGTTCAGACGATGCTCGTTT
LOC_Os05g30700
Os.8480.1.S1_at--14--631Chr05:17700418..17700442 (25 bp)
ATGCTCGTTTTTACTGTACTTTGAT
LOC_Os05g30700
Os.8480.1.S1_at--235--7011Chr05:17700433..17700457 (25 bp)
GTACTTTGATATTCTCCTCGTTCTA
LOC_Os05g30700
Os.8480.1.S1_at--1057--10131Chr05:17700472..17700496 (25 bp)
TATCCTCAATTTTACCTTACTGCAA
LOC_Os05g30700
Os.8480.1.S1_at--658--10251Chr05:17700519..17700543 (25 bp)
TTTGTGCCACATCTATCGGCAGACA
LOC_Os05g30700
Os.8480.1.S1_at--109--6571Chr05:17700553..17700577 (25 bp)
GATTCCTCTTGTATTAGTCCTTTCT
LOC_Os05g30700
Target Sequence 
AGACCCTATCCTGAGCTAGCAAGATTCAAATCGGAATTTCAGAGAACATGCAGACATCAGAAGCTATGGAAGGTTCCGAA
CCCNTGAGCTCAGGAGGAGCCTGCGANNAAGCTATCATTGACAAGGTTATTACTGGTCCTACTGGATACAGAACATACCT
GGAGGCCCATCCAGAGCAGGAGAAATGTGGCAGTAATCAACAGGACATGGAAGACATGGTGAACGAGCTTTTCGAAGGAT
GAAGGATTATTCCAGCTTCATATTGGCATGCCCATTTATATATAGAGTATAAATTTTAAAGCAGCTACGACGAGAAGAGG
CCAAGACTAAACAAGTTCAGACGATGCTCGTTTTTACTGTACTTTGATATTCTCCTCGTTCTATCCCTTTTTTAAGATAT
CCTCAATTTTACCTTACTGCAAATNAAATGTATTGGACGGCTTCTTTGTGCCACATCTATCGGCAGACAAAGATACATGA
TTCCTCTTGTATTAGTCCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis