Browse Element(s) Details


Os.54160.1.S1_at

Description gb:AK102233.1
DB_XREF= gi:32987442
TID=Os.54160.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088A19, full insert sequence.
FL= gb:AK102233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3068011/11exocyst subunit EXO70 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30630OsAffx.14890.1.S1_at11/115+17661375..17661829hypothetical protein
LOC_Os05g30630OsAffx.15866.1.S1_x_at1/115+17661375..17661829hypothetical protein
LOC_Os05g30640Os.57089.1.S1_at10/115+17670490..17672325expressed protein
LOC_Os05g30650NANA5+17674564..17675954hypothetical protein
LOC_Os05g30660Os.53090.1.S1_at11/115+17675973..17678016expressed protein
LOC_Os05g30670OsAffx.27089.1.S1_at11/115+17680351..17681767hypothetical protein
LOC_Os05g30670OsAffx.25936.5.S1_x_at1/115+17680351..17681767hypothetical protein
LOC_Os05g30680Os.54160.1.S1_at11/115+17684726..17686491exocyst subunit EXO70 family protein, putative, expressed
LOC_Os05g30690NANA5+17693166..17693381pentatricopeptide, putative
LOC_Os05g30700Os.8480.1.S1_at11/115+17698739..17700669expressed protein
LOC_Os05g30710Os.52883.1.S1_at11/115+17702381..17704833pentatricopeptide, putative, expressed
LOC_Os05g30720OsAffx.25435.1.S1_at2/115+17707057..17710121transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54160.1.S1_at--748--231Chr05:17685898..17685922 (25 bp)
ATATCAGTTTCTTGTACCCAGCGAC
LOC_Os05g30680
Os.54160.1.S1_at--620--2331Chr05:17685943..17685967 (25 bp)
AAAGTTCCACTATGAGCAGTACCAA
LOC_Os05g30680
Os.54160.1.S1_at--458--2791Chr05:17685969..17685993 (25 bp)
AAGAGTATATGCGTGCCTCCTGGGA
LOC_Os05g30680
Os.54160.1.S1_at--862--3871Chr05:17685996..17686020 (25 bp)
CTGTTCTGTCTTGCCTACACGATAA
LOC_Os05g30680
Os.54160.1.S1_at--945--9591Chr05:17686046..17686070 (25 bp)
TCATCGCATTCGGAGCTGTCAAGAT
LOC_Os05g30680
Os.54160.1.S1_at--999--9271Chr05:17686119..17686143 (25 bp)
TCCCGCTTCCGAATCTTAGGCAGAG
LOC_Os05g30680
Os.54160.1.S1_at--1086--5031Chr05:17686138..17686162 (25 bp)
GCAGAGCCTGCGAGAAACCATCATT
LOC_Os05g30680
Os.54160.1.S1_at--704--3011Chr05:17686218..17686242 (25 bp)
AATGCGGCAGAGATCCACTGGACAT
LOC_Os05g30680
Os.54160.1.S1_at--357--6831Chr05:17686290..17686314 (25 bp)
GTTTCAGAATGACAGGCCCGCACAA
LOC_Os05g30680
Os.54160.1.S1_at--409--3171Chr05:17686414..17686438 (25 bp)
AATTGTGTTCTTATCCCTTGTTTCT
LOC_Os05g30680
Os.54160.1.S1_at--814--10791Chr05:17686431..17686455 (25 bp)
TTGTTTCTTAACTCCAGCGGTGATT
LOC_Os05g30680
Target Sequence 
ATATCAGTTTCTTGTACCCAGCGACTACAGCCCTCCATCGGAAATAAAGTTCCACTATGAGCAGTACCAAAAAGAGTATA
TGCGTGCCTCCTGGGAACCTGTTCTGTCTTGCCTACACGATAAGATGCCACCGTGCTTCCCTAAGCTCTCATCGCATTCG
GAGCTGTCAAGATTCGAGTTGGAATTTGAGAAAACATGCAGTCATCAGAAGCTGTGGAAGGTCCCGCTTCCGAATCTTAG
GCAGAGCCTGCGAGAAACCATCATTAATAAGATCATTACTAGATACAAAAAGTACATGGAGGACCATCCAGAGCAGGAGA
AATGCGGCAGAGATCCACTGGACATGGAAGGCATGGTGAATGATCTATTTGAAGGATGAAGGGGTTGCTACAGTTTCAGA
ATGACAGGCCCGCACAAATAGAGTATAAGTTTTAAAGCAGCTACGAAGAGGAGGCCAAGGTTAAATAGGTGTTCTTGATG
TCCTTTTTACTTTTACCGTATTTTGATGTCGGGTGCAATTGTGTTCTTATCCCTTGTTTCTTAACTCCAGCGGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis