Browse Element(s) Details


Os.53090.1.S1_at

Description gb:AK070770.1
DB_XREF= gi:32980793
TID=Os.53090.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069I18, full insert sequence.
FL= gb:AK070770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3066011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30610Os.28346.3.S1_x_at8/115+17649421..17655139retrotransposon protein, putative, unclassified
LOC_Os05g30620Os.57089.1.S1_at4/115+17657038..17657532hypothetical protein
LOC_Os05g30630OsAffx.14890.1.S1_at11/115+17661375..17661829hypothetical protein
LOC_Os05g30630OsAffx.15866.1.S1_x_at1/115+17661375..17661829hypothetical protein
LOC_Os05g30640Os.57089.1.S1_at10/115+17670490..17672325expressed protein
LOC_Os05g30650NANA5+17674564..17675954hypothetical protein
LOC_Os05g30660Os.53090.1.S1_at11/115+17675973..17678016expressed protein
LOC_Os05g30670OsAffx.27089.1.S1_at11/115+17680351..17681767hypothetical protein
LOC_Os05g30670OsAffx.25936.5.S1_x_at1/115+17680351..17681767hypothetical protein
LOC_Os05g30680Os.54160.1.S1_at11/115+17684726..17686491exocyst subunit EXO70 family protein, putative, expressed
LOC_Os05g30690NANA5+17693166..17693381pentatricopeptide, putative
LOC_Os05g30700Os.8480.1.S1_at11/115+17698739..17700669expressed protein
LOC_Os05g30710Os.52883.1.S1_at11/115+17702381..17704833pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53090.1.S1_at--34--9131Chr05:17676530..17676554 (25 bp)
TGCTGGCCAGATTCCAGTCGGAATT
LOC_Os05g30660
Os.53090.1.S1_at--529--1091Chr05:17676482..17676506 (25 bp)
AGCTGTGGAAAGTCCCGAACACCGA
LOC_Os05g30660
Os.53090.1.S1_at--624--5611Chr05:17676426..17676450 (25 bp)
GACAAGGTCATCACTGCATACAGAA
LOC_Os05g30660
Os.53090.1.S1_at--461--5571Chr05:17676404..17676428 (25 bp)
GAAAGTACCTGGAGGGCCATCTGGA
LOC_Os05g30660
Os.53090.1.S1_at--478--2331Chr05:17676371..17676395 (25 bp)
AAAGTAGCAGCGATCTGCTGGCCAT
LOC_Os05g30660
Os.53090.1.S1_at--546--2411Chr05:17676217..17676241 (25 bp)
AAACAAGTTCATTCGATGCCTCTTT
LOC_Os05g30660
Os.53090.1.S1_at--271--591Chr05:17676202..17676226 (25 bp)
ATGCCTCTTTTTTCTAGTGTTCTGA
LOC_Os05g30660
Os.53090.1.S1_at--570--8151Chr05:17676167..17676191 (25 bp)
GGAAATCTTCATTCTACCTTGACAA
LOC_Os05g30660
Os.53090.1.S1_at--1152--10091Chr05:17676135..17676159 (25 bp)
TATGTACTTCAGTCTTGCTGTGCCA
LOC_Os05g30660
Os.53090.1.S1_at--1110--3011Chr05:17676092..17676116 (25 bp)
AATGCGTGCTTCCTCTTGTATTAGA
LOC_Os05g30660
Os.53090.1.S1_at--506--10791Chr05:17676077..17676101 (25 bp)
TTGTATTAGATCCTCCTTTCCTTGT
LOC_Os05g30660
Target Sequence 
TGCTGGCCAGATTCCAGTCGGAATTTCAGAAAGCGTGCAGGCATCAGAAGCTGTGGAAAGTCCCGAACACCGAGCACAGG
AACTCGCTGCGAAAAGCCATTAGTGACAAGGTCATCACTGCATACAGAAAGTACCTGGAGGGCCATCTGGAGCCAGAGAA
AAGTAGCAGCGATCTGCTGGCCATGGAAGACATGGTGAACGAGCTATTTGAAGGATGAAGGAGTACTAATTCCTGTTTTA
GAATTACATGGCCTAATTGGCCATGCGTATAGGATAAATTTTGAAGCAGCTAACAGGACAAGGGGCTAAGGTTAAACAAG
TTCATTCGATGCCTCTTTTTTCTAGTGTTCTGATTTTTTTTAAGGAAATCTTCATTCTACCTTGACAAGGAATAATATGT
ACTTCAGTCTTGCTGTGCCAGATTTGTTGGCACATTGCAATGCGTGCTTCCTCTTGTATTAGATCCTCCTTTCCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis