Browse Element(s) Details


OsAffx.27089.1.S1_at

Description tigr:9633.m02787
TID=OsAffx.27089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3067011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30620Os.57089.1.S1_at4/115+17657038..17657532hypothetical protein
LOC_Os05g30630OsAffx.14890.1.S1_at11/115+17661375..17661829hypothetical protein
LOC_Os05g30630OsAffx.15866.1.S1_x_at1/115+17661375..17661829hypothetical protein
LOC_Os05g30640Os.57089.1.S1_at10/115+17670490..17672325expressed protein
LOC_Os05g30650NANA5+17674564..17675954hypothetical protein
LOC_Os05g30660Os.53090.1.S1_at11/115+17675973..17678016expressed protein
LOC_Os05g30670OsAffx.27089.1.S1_at11/115+17680351..17681767hypothetical protein
LOC_Os05g30670OsAffx.25936.5.S1_x_at1/115+17680351..17681767hypothetical protein
LOC_Os05g30680Os.54160.1.S1_at11/115+17684726..17686491exocyst subunit EXO70 family protein, putative, expressed
LOC_Os05g30690NANA5+17693166..17693381pentatricopeptide, putative
LOC_Os05g30700Os.8480.1.S1_at11/115+17698739..17700669expressed protein
LOC_Os05g30710Os.52883.1.S1_at11/115+17702381..17704833pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27089.1.S1_at--938--4131Chr05:17681713..17681737 (25 bp)
CGCGTAGGAACTTCGCGCGGCATCG
LOC_Os05g30670
OsAffx.27089.1.S1_at--325--1491Chr05:17681677..17681701 (25 bp)
AGCAAGCTCCGTGCGTCTTCGATGA
LOC_Os05g30670
OsAffx.27089.1.S1_at--1122--3612Chr05:14231804..14231823 (20 bp)
CTTCGATGACGGTGGACACACGGAC
NONE
OsAffx.27089.1.S1_at--294--7531Chr05:17681650..17681674 (25 bp)
GTGGACACACGGACGCAGCTGAGCT
LOC_Os05g30670
OsAffx.27089.1.S1_at--41--7231Chr05:17681618..17681642 (25 bp)
GTCGACGACGTTGGCTAAGCTCCGT
LOC_Os05g30670
OsAffx.27089.1.S1_at--751--9791Chr05:17681603..17681627 (25 bp)
TAAGCTCCGTGCGATGCTAAGGACG
LOC_Os05g30670
OsAffx.27089.1.S1_at--466--6851Chr05:17680431..17680451 (21 bp)
GTTTGGTGGATCACCTGTGACGGCT
LOC_Os05g30670
OsAffx.27089.1.S1_at--1044--8671Chr05:17680416..17680440 (25 bp)
TGTGACGGCTTCTATCTACCAAAGA
LOC_Os05g30670
OsAffx.27089.1.S1_at--503--1931Chr05:17680412..17680436 (25 bp)
ACGGCTTCTATCTACCAAAGACCAT
LOC_Os05g30670
OsAffx.27089.1.S1_at--254--1751Chr05:17680386..17680410 (25 bp)
ACCTCTGACGGCCTTTCTTTACATG
LOC_Os05g30670
OsAffx.27089.1.S1_at--184--8951Chr05:17680381..17680405 (25 bp)
TGACGGCCTTTCTTTACATGCCCAT
LOC_Os05g30670
Target Sequence 
CGCGTAGGAACTTCGCGCGGCATCGACGACGGCAGCAGCAAGCTCCGTGCGTCTTCGATGACGGTGGACACACGGACGCA
GCTGAGCTCCGCGGCGTCGACGACGTTGGCTAAGCTCCGTGCGATGCTAAGGACGGTGGCGGAGCTCCGTCGTGGAGGTT
CACAAGGAACAGGATACAAGAAAGTTTGGTGGATCACCTGTGACGGCTTCTATCTACCAAAGACCATCACCTCTGACGGC
CTTTCTTTACATGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis