Browse Element(s) Details


Os.53070.1.S1_at

Description gb:AK070694.1
DB_XREF= gi:32980718
TID=Os.53070.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056G17, full insert sequence.
FL= gb:AK070694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0317011/11Protein kinase domain containing protein, expressed
LOC_Os08g029901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03140NANA8+1434338..1435579retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03150OsAffx.29006.2.S1_at11/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03150Os.50872.1.S1_at4/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03160OsAffx.29006.3.S1_x_at11/118+1447811..1450004lectin protein kinase, putative
LOC_Os08g03170Os.53070.1.S1_at11/118+1460003..1461829Protein kinase domain containing protein, expressed
LOC_Os08g03180Os.53253.1.S1_at11/118+1462078..1466880retrotransposon protein, putative, unclassified, expressed
LOC_Os08g03190OsAffx.29007.1.S1_at11/118+1466896..1467375Legume lectins beta domain containing protein
LOC_Os08g03200OsAffx.29006.1.S1_at1/118+1471193..1478565retrotransposon protein, putative, unclassified
LOC_Os08g03210OsAffx.20354.1.S1_at2/118+1484061..1486989retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53070.1.S1_at--240--5192Chr08:1460574..1460598 (25 bp)
GCAAGGCTCATTGACCATGCTATTG
LOC_Os08g03170
Os.53070.1.S1_at--499--4871Chr08:1460513..1460537 (25 bp)
GCTATGTCGACCCTGAATGTGTGAT
LOC_Os08g03170
Os.53070.1.S1_at--1018--1451Chr08:1460390..1460414 (25 bp)
AGAATAATGGCCTCTTCCGACTAGT
LOC_Os08g03170
Os.53070.1.S1_at--372--10111Chr08:1460357..1460381 (25 bp)
TATGGGACCTTTACGGCCAGGGAGC
LOC_Os08g03170
Os.53070.1.S1_at--533--2571Chr08:1460304..1460328 (25 bp)
AACGGTGACTACGACGCGACAGACA
LOC_Os08g03170
Os.53070.1.S1_at--301--611Chr08:1460233..1460257 (25 bp)
ATGCGCTCGTCCATCTATTAGAGTT
LOC_Os08g03170
Os.53070.1.S1_at--753--10031Chr08:1460215..1460239 (25 bp)
TAGAGTTGCCATGGCAGTTCTCCAA
LOC_Os08g03170
Os.53070.1.S1_at--40--2971Chr08:1460187..1460211 (25 bp)
AATGGACCACTACCGATGCTACCAA
LOC_Os08g03170
Os.53070.1.S1_at--1094--6311Chr08:1460173..1460197 (25 bp)
GATGCTACCAACCAAGATGCCCGTG
LOC_Os08g03170
Os.53070.1.S1_at--456--1691Chr08:1460056..1460080 (25 bp)
ACCTCGTTAGGGATGTACGCTTGCC
LOC_Os08g03170
Os.53070.1.S1_at--107--10711Chr08:1460036..1460060 (25 bp)
TTGCCCACTCATGGTACACATTGAT
LOC_Os08g03170
Target Sequence 
GCAAGGCTCATTGACCATGCTATTGGAGCACAAACGATGACCCACCCCTCAGGTACACCGGGCTATGTCGACCCTGAATG
TGTGATCACAGGCAAAGCAAGTGCTGAATCTGATGTGTACAGTTTTGGCATTGTTCTTCTGGAAGTGGCATGTGGAAGGA
GACCAATGAACCTACTGGATGACCAGAATAATGGCCTCTTCCGACTAGTCGAATGGGTATGGGACCTTTACGGCCAGGGA
GCCGTTCTCAAAGCGGCCGACGAGCGCCTCAACGGTGACTACGACGCGACAGACATGGAGTGTGTCTTGGTTGTTGGGCT
CTGGTGTGCTCACCCAGACCGATGCGCTCGTCCATCTATTAGAGTTGCCATGGCAGTTCTCCAATCCAATGGACCACTAC
CGATGCTACCAACCAAGATGCCCGTGCCAACATATGGGCCGCCGGTGGCCTCATCAGAGGGCCAGCACTCGTCGTCGACA
GGAATATCATCCTCAAGTTTGACACAAACATCAATCACACCTCGTTAGGGATGTACGCTTGCCCACTCATGGTACACATT
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis