Browse Element(s) Details


Os.53104.1.S1_at

Description gb:AK070833.1
DB_XREF= gi:32980856
TID=Os.53104.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023070K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070K11, full insert sequence.
FL= gb:AK070833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1866010/11expressed protein
LOC_Os02g579002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18630NANA11+10493867..10494205hypothetical protein
LOC_Os11g18640Os.46306.1.S1_x_at2/1111+10496608..10501523transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18660Os.53104.1.S1_at10/1111+10515895..10517223expressed protein
LOC_Os11g18660OsAffx.18815.1.S1_x_at1/1111+10515895..10517223expressed protein
LOC_Os11g18670OsAffx.7148.1.S1_at11/1111+10526506..10534068Ubiquitin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53104.1.S1_at--123--5231Chr11:10516460..10516484 (25 bp)
GAATCTCCATAACAAGCCCACGCAA
LOC_Os11g18660
Os.53104.1.S1_at--147--1751Chr11:10516406..10516430 (25 bp)
ACCTCACGAAGTACGCCATGGTCAT
LOC_Os11g18660
Os.53104.1.S1_at--400--2832Chr11:10516288..10516312 (25 bp)
AAGTTCAAGGTGTCCTTCGCCGACA
LOC_Os11g18660
Os.53104.1.S1_at--554--4651Chr11:10516263..10516287 (25 bp)
GCGTCGTCGGAATCCTTGGGCAGCT
LOC_Os11g18660
Os.53104.1.S1_at--29--4932Chr11:10516170..10516194 (25 bp)
GCTTGCCGTTGTTTGTGAGCCAAAG
LOC_Os11g18660
Os.53104.1.S1_at--618--3291Chr11:10516150..10516174 (25 bp)
CAAAGTCATCCACAAGGCGGTGATC
LOC_Os11g18660
Os.53104.1.S1_at--88--5331Chr11:10516109..10516133 (25 bp)
GAAGTAAAGCTGCTGCCGTTACCAT
LOC_Os11g18660
Os.53104.1.S1_at--354--3831NONE
CTGCTGCCGTTACCATGACGATGGG
NONE
Os.53104.1.S1_at--361--5851Chr11:10516014..10516038 (25 bp)
GACCATCCGTACTTGATGGTATCAA
LOC_Os11g18660
Os.53104.1.S1_at--234--10432Chr02:467221..467259 (25 bp)
TTATGCTTTGAAGGGCTTTGGGCTT
NONE
Os.53104.1.S1_at--857--7951Chr11:10515923..10515947 (25 bp)
GGATCACTAATTGTCACTCTTCTCA
LOC_Os11g18660
Target Sequence 
GAATCTCCATAACAAGCCCACGCAAGCGCGGCCGCGGTGGCAGCAACGACGACGACCTCACGAAGTACGCCATGGTCATC
TTCCTCCCCGACGTGCGCGACGGGCTGCGTGGCCTCGTGGAGAAGATGGCGTCGCGTCCGAATCGGTGTGGGTCGGCGAG
TTCATGGTGCCCAAGTTCAAGGTGTCCTTCGCCGACAGCGTCGTCGGAATCCTTGGGCAGCTGGGGCTCCGGCTGCCGTT
CTCACCTTAGCTCGCCGACCTGCTCGTCATGGTGGAGGACGACGGCTCTGGCTTGCCGTTGTTTGTGAGCCAAAGTCATC
CACAAGGCGGTGATCGAGGTGAATGCGGAAGGAAGTAAAGCTGCTGCCGTTACCATGACGATGGGGAGAATTGGGTGTTC
AGGGATGAAGCGGCCGCTGCCTCCGCCGCTGGTGGACTTCGTCGCCGACCATCCGTACTTGATGGTATCAAGTGAAGTCT
CAAATGATTAATACATGATTATGCTTTGAAGGGCTTTGGGCTTAAGCAAAACATGTTGGATCACTAATTGTCACTCTTCT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis