Browse Element(s) Details


OsAffx.7148.1.S1_at

Description tigr:9639.m01726
TID=OsAffx.7148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1867011/11Ubiquitin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18640Os.46306.1.S1_x_at2/1111+10496608..10501523transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18660Os.53104.1.S1_at10/1111+10515895..10517223expressed protein
LOC_Os11g18660OsAffx.18815.1.S1_x_at1/1111+10515895..10517223expressed protein
LOC_Os11g18670OsAffx.7148.1.S1_at11/1111+10526506..10534068Ubiquitin family protein
LOC_Os11g18680OsAffx.31042.1.S1_at11/1111+10549782..10550411hypothetical protein
LOC_Os11g18690OsAffx.31043.1.S1_at11/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18690OsAffx.2089.1.S1_at1/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7148.1.S1_at--912--6571Chr11:10527073..10527097 (25 bp)
GATTCCGTCCATTGCGAAAACCATT
LOC_Os11g18670
OsAffx.7148.1.S1_at--711--6911Chr11:10526956..10526980 (25 bp)
GTATGCAGGTCGACATCTTGGCGAT
LOC_Os11g18670
OsAffx.7148.1.S1_at--1021--10831Chr11:10526880..10526904 (25 bp)
TTGGTTTCTCCAGCCGACAAAATGT
LOC_Os11g18670
OsAffx.7148.1.S1_at--103--2571Chr11:10526805..10526829 (25 bp)
AACTGGTATACTGTTGCGGATGTCA
LOC_Os11g18670
OsAffx.7148.1.S1_at--269--10851Chr11:10526759..10526783 (25 bp)
TTGGTTTTCCTGAGTGCTCACAGAT
LOC_Os11g18670
OsAffx.7148.1.S1_at--41--6471Chr11:10526737..10526761 (25 bp)
GATACTCCTGCCGACTAAATCGGGA
LOC_Os11g18670
OsAffx.7148.1.S1_at--405--6031Chr11:10526714..10526738 (25 bp)
GAGATGCTATCGAGCTTAACGGCAC
LOC_Os11g18670
OsAffx.7148.1.S1_at--546--4891Chr11:10526701..10526725 (25 bp)
GCTTAACGGCACTCAAACACTCAAA
LOC_Os11g18670
OsAffx.7148.1.S1_at--533--2751Chr11:10526664..10526688 (25 bp)
AAGAACAATGCCGTCCTGATGCTGC
LOC_Os11g18670
OsAffx.7148.1.S1_at--10--7951Chr11:10526635..10526659 (25 bp)
GGATTTCCCGATCTTCATCAAAACA
LOC_Os11g18670
OsAffx.7148.1.S1_at--434--7731Chr11:10526587..10526611 (25 bp)
GGTGGTTAGCTCATTTCACACTGAA
LOC_Os11g18670
Target Sequence 
GATTCCGTCCATTGCGAAAACCATTGAACTCAGTGTAAAAAAATCAGACATTGTTGCTGATGTCAAGTTGCAGATTGAAC
TGAAGGAAGGAATTCATCTGGATAACCAAATCCTGATGTATGCAGGTCGACATCTTGGCGATAGTCAGATTTTAAGTGAA
TGTGGTCTATCAGATGACCATATACTTCATGTTTTGGTTTCTCCAGCCGACAAAATGTGTGTCTATATAAACATTAGAGA
TACAAGAACTGTTAGGGTTGATGTCAGGAACTGGTATACTGTTGCGGATGTCAAGTTGATGGTAGAAACAATGTTTGGTT
TTCCTGAGTGCTCACAGATACTCCTGCCGACTAAATCGGGAGATGCTATCGAGCTTAACGGCACTCAAACACTCAAAGAT
CAGAATATAAAGAACAATGCCGTCCTGATGCTGCTTCCGGATTTCCCGATCTTCATCAAAACATGGGAAGGGAGGACATT
GACCATGGTGGTTAGCTCATTTCACACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis