Browse Element(s) Details


OsAffx.31043.1.S1_at

Description tigr:9639.m01728
TID=OsAffx.31043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=beta-xylosidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1869011/11Glycosyl hydrolase family 3 C terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18670OsAffx.7148.1.S1_at11/1111+10526506..10534068Ubiquitin family protein
LOC_Os11g18680OsAffx.31042.1.S1_at11/1111+10549782..10550411hypothetical protein
LOC_Os11g18690OsAffx.31043.1.S1_at11/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18690OsAffx.2089.1.S1_at1/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18700OsAffx.31811.5.S1_at11/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.3.S1_x_at6/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.1.S1_at2/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18710OsAffx.31045.1.S1_at11/1111+10576444..10578387hypothetical protein
LOC_Os11g18720NANA11+10578942..10582691retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31043.1.S1_at--178--9911Chr11:10553814..10553838 (25 bp)
TACTCCAAATTCTCTCGCCGCATGT
LOC_Os11g18690
OsAffx.31043.1.S1_at--1150--9491Chr11:10553802..10553826 (25 bp)
TCTCGCCGCATGTTCTCCAGTTTCT
LOC_Os11g18690
OsAffx.31043.1.S1_at--67--2611Chr11:10553769..10553793 (25 bp)
AACGCCGGTAACCTGAGCCTACTCG
LOC_Os11g18690
OsAffx.31043.1.S1_at--643--7831Chr11:10553763..10553787 (25 bp)
GGTAACCTGAGCCTACTCGCCGGAG
LOC_Os11g18690
OsAffx.31043.1.S1_at--80--3731Chr11:10553751..10553775 (25 bp)
CTACTCGCCGGAGTTATGGCGAGGC
LOC_Os11g18690
OsAffx.31043.1.S1_at--637--4991Chr11:10553705..10553729 (25 bp)
GCATGAGCAGCTACCTAGTCAAGGA
LOC_Os11g18690
OsAffx.31043.1.S1_at--526--4851Chr11:10553696..10553720 (25 bp)
GCTACCTAGTCAAGGAGATCGGCGT
LOC_Os11g18690
OsAffx.31043.1.S1_at--158--6391Chr11:10553539..10553563 (25 bp)
GATCGGGTTCCGGAGCCAGCATGTC
LOC_Os11g18690
OsAffx.31043.1.S1_at--160--6711Chr11:10553533..10553557 (25 bp)
GTTCCGGAGCCAGCATGTCAAGGTA
LOC_Os11g18690
OsAffx.31043.1.S1_at--918--6131Chr11:10553484..10553508 (25 bp)
GAGGTGAGCCCGTGCGAGCATTTCA
LOC_Os11g18690
OsAffx.31043.1.S1_at--24--4551Chr11:10553477..10553501 (25 bp)
GCCCGTGCGAGCATTTCAGCTGGGT
LOC_Os11g18690
Target Sequence 
TACTCCAAATTCTCTCGCCGCATGTTCTCCAGTTTCTCCACCTCCAACGCCGGTAACCTGAGCCTACTCGCCGGAGTTAT
GGCGAGGCGAGCCGGAGACGACGGCGGTGGCATGAGCAGCTACCTAGTCAAGGAGATCGGCGTCGAGAGGTGCAGCCGGC
TCGTCTTCCCGGCGGTGGTCGAGGTGCAGAACCACGGCCCCATGGACGGCAAGCACTCGGTGCTCATGTACCTCCGGTGG
CCAACCACGAGCGGCGGCCGGCCGGCGAGGCAGCTGATCGGGTTCCGGAGCCAGCATGTCAAGGTAGGGGAGAAGGCCAT
GGTGAGCTTCGAGGTGAGCCCGTGCGAGCATTTCAGCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis