Browse Element(s) Details


OsAffx.31042.1.S1_at

Description tigr:9639.m01727
TID=OsAffx.31042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1868011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18670OsAffx.7148.1.S1_at11/1111+10526506..10534068Ubiquitin family protein
LOC_Os11g18680OsAffx.31042.1.S1_at11/1111+10549782..10550411hypothetical protein
LOC_Os11g18690OsAffx.31043.1.S1_at11/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18690OsAffx.2089.1.S1_at1/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18700OsAffx.31811.5.S1_at11/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.3.S1_x_at6/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.1.S1_at2/1111+10567069..10571138Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31042.1.S1_at--1143--8371Chr11:10549884..10550325 (25 bp)
GGCGAACACGCAGTGAACAGTACTT
LOC_Os11g18680
OsAffx.31042.1.S1_at--97--5511Chr11:10549887..10550328 (25 bp)
GAACACGCAGTGAACAGTACTTACT
LOC_Os11g18680
OsAffx.31042.1.S1_at--128--2171Chr11:10549889..10550330 (25 bp)
ACACGCAGTGAACAGTACTTACTTC
LOC_Os11g18680
OsAffx.31042.1.S1_at--617--3411Chr11:10550319..10550342 (24 bp)
CAGTACTTACTTCCTCCGTCGAAAT
LOC_Os11g18680
OsAffx.31042.1.S1_at--958--2051Chr11:10550326..10550350 (25 bp)
ACTTCCTCCGTCGAAATATGATTAG
LOC_Os11g18680
OsAffx.31042.1.S1_at--481--9251Chr11:10550329..10550353 (25 bp)
TCCTCCGTCGAAATATGATTAGCAT
LOC_Os11g18680
OsAffx.31042.1.S1_at--483--4291Chr11:10550330..10550354 (25 bp)
CCTCCGTCGAAATATGATTAGCATA
LOC_Os11g18680
OsAffx.31042.1.S1_at--900--6551Chr11:10550345..10550369 (25 bp)
GATTAGCATAAAACTTCTAGACAGG
LOC_Os11g18680
OsAffx.31042.1.S1_at--582--4831Chr11:10550350..10550374 (25 bp)
GCATAAAACTTCTAGACAGGAGGAC
LOC_Os11g18680
OsAffx.31042.1.S1_at--291--9811Chr11:10550353..10550377 (25 bp)
TAAAACTTCTAGACAGGAGGACCAA
LOC_Os11g18680
OsAffx.31042.1.S1_at--577--2371Chr11:10550355..10550379 (25 bp)
AAACTTCTAGACAGGAGGACCAAGG
LOC_Os11g18680
Target Sequence 
GGCGAACACGCAGTGAACAGTACTTACTTCCTCCGTCGAAATATGATTAGCATAAAACTTCTAGACAGGAGGACCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis