Browse Element(s) Details


OsAffx.31045.1.S1_at

Description tigr:9639.m01730
TID=OsAffx.31045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1871011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18690OsAffx.31043.1.S1_at11/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18690OsAffx.2089.1.S1_at1/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18700OsAffx.31811.5.S1_at11/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.3.S1_x_at6/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.1.S1_at2/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18710OsAffx.31045.1.S1_at11/1111+10576444..10578387hypothetical protein
LOC_Os11g18720NANA11+10578942..10582691retrotransposon protein, putative, unclassified
LOC_Os11g18730Os.27453.1.S1_at11/1111+10587515..10593743Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g18740OsAffx.7149.1.S1_at8/1111+10595759..10596947hypothetical protein
LOC_Os11g18740OsAffx.17242.1.S1_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18740Os.37711.3.S1_x_at1/1111+10595759..10596947hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31045.1.S1_at--700--10071Chr11:10577879..10577903 (25 bp)
TAGGTCAGGTGAAGGCCTTTGCCAA
LOC_Os11g18710
OsAffx.31045.1.S1_at--489--4491Chr11:10577905..10577929 (25 bp)
GCCGGTGTTGCTCGGAACCTAATAT
LOC_Os11g18710
OsAffx.31045.1.S1_at--1074--2431Chr11:10577932..10577956 (25 bp)
AAAAGTGCTGGCAGTGCTGGCTCCT
LOC_Os11g18710
OsAffx.31045.1.S1_at--690--9712Chr11:10577996..10578020 (25 bp)
TAATTCCGCCAAGAGTTGATGCCCA
LOC_Os11g18710
OsAffx.31045.1.S1_at--144--7951Chr11:10578149..10578173 (25 bp)
GGATACATGGTTTCTCGGTTTCGCA
LOC_Os11g18710
OsAffx.31045.1.S1_at--802--9431Chr11:10578163..10578187 (25 bp)
TCGGTTTCGCACTGTGACCAATCAG
LOC_Os11g18710
OsAffx.31045.1.S1_at--570--3071Chr11:10578182..10578206 (25 bp)
AATCAGGGTCTGACTCACATTCGGC
LOC_Os11g18710
OsAffx.31045.1.S1_at--378--211Chr11:10578239..10578263 (25 bp)
ATTTGCACCAGCAAGCATCCTTTGG
LOC_Os11g18710
OsAffx.31045.1.S1_at--456--571Chr11:10578255..10578279 (25 bp)
ATCCTTTGGCGATGTATCTTCGGAA
LOC_Os11g18710
OsAffx.31045.1.S1_at--196--2451Chr11:10578302..10578326 (25 bp)
AAAATGTGCAGGCTCTTTCGGCGGC
LOC_Os11g18710
OsAffx.31045.1.S1_at--891--8311Chr11:10578324..10578348 (25 bp)
GGCTCAATCTTCAGGCCAGGTTCAG
LOC_Os11g18710
Target Sequence 
TAGGTCAGGTGAAGGCCTTTGCCAACGCCGGTGTTGCTCGGAACCTAATATTCAAAAGTGCTGGCAGTGCTGGCTCCTCC
TCGTCGGGCAAGGTGAAGGGGGATAAACGGGATGAAATAATTCCGCCAAGAGTTGATGCCCATGATGATTTTGAGGGCCA
GGAAAAGTCTAGGGATATACACACTGATGAACAGCTCGCGCAGCAAGCCCAAGGGATGATGGTTGATAGCCAGGTTGGTA
TGAAGGGTGGGACATCTGGTGGTGTTCTGGGGATACATGGTTTCTCGGTTTCGCACTGTGACCAATCAGGGTCTGACTCA
CATTCGGCTCAGTCCTTGGGGATGATTCCGGCAATTGCCAATTTGCACCAGCAAGCATCCTTTGGCGATGTATCTTCGGA
AGATCGTGGTAATCTCATCAAGGAAAATGTGCAGGCTCTTTCGGCGGCTCAATCTTCAGGCCAGGTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis