Browse Element(s) Details


Os.27453.1.S1_at

Description gb:AK108558.1
DB_XREF= gi:32993767
TID=Os.27453.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-A01, full insert sequence.
FL= gb:AK108558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1873011/11Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18700OsAffx.31811.5.S1_at11/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.3.S1_x_at6/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.1.S1_at2/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18710OsAffx.31045.1.S1_at11/1111+10576444..10578387hypothetical protein
LOC_Os11g18720NANA11+10578942..10582691retrotransposon protein, putative, unclassified
LOC_Os11g18730Os.27453.1.S1_at11/1111+10587515..10593743Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g18740OsAffx.7149.1.S1_at8/1111+10595759..10596947hypothetical protein
LOC_Os11g18740OsAffx.17242.1.S1_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18740Os.37711.3.S1_x_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18750OsAffx.18926.1.S1_x_at11/1111+10615324..10616193hypothetical protein
LOC_Os11g18750OsAffx.18926.1.S1_at11/1111+10615324..10616193hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27453.1.S1_at--212--3111Chr11:10592515..10592539 (25 bp)
AATATGCGTGCTGTGGTGAGCCCAC
LOC_Os11g18730
Os.27453.1.S1_at--110--7771Chr11:10592501..10592525 (25 bp)
GGTGAGCCCACTTTAATTTGGATTA
LOC_Os11g18730
Os.27453.1.S1_at--851--9871Chr11:10592456..10592480 (25 bp)
TACATGCCTGCCGTTGCTGAAAATG
LOC_Os11g18730
Os.27453.1.S1_at--567--9231Chr11:10592380..10592404 (25 bp)
TCCTTAATCCATATCGACTGTGCAC
LOC_Os11g18730
Os.27453.1.S1_at--590--5731Chr11:10592365..10592389 (25 bp)
GACTGTGCACGATCGAATATCATCT
LOC_Os11g18730
Os.27453.1.S1_at--114--5231Chr11:10592351..10592375 (25 bp)
GAATATCATCTGTTAACCCCACTTT
LOC_Os11g18730
Os.27453.1.S1_at--1116--2611Chr11:10592337..10592361 (25 bp)
AACCCCACTTTGTTGATCGATCAGG
LOC_Os11g18730
Os.27453.1.S1_at--402--6211Chr11:10590566..10590590 (25 bp)
GAGGCCAGGGCCTTGTACAACCTAG
LOC_Os11g18730
Os.27453.1.S1_at--1049--9451Chr11:10590520..10590544 (25 bp)
TCTGGTCTCCTAACGTGAACATCTA
LOC_Os11g18730
Os.27453.1.S1_at--399--4211Chr11:10590427..10590451 (25 bp)
CCGTCGCCTTCGTTAAGGGATTGCA
LOC_Os11g18730
Os.27453.1.S1_at--821--1071Chr11:10590390..10590414 (25 bp)
AGGGACTCTACAAACGTCCGCCTGT
LOC_Os11g18730
Target Sequence 
AATATGCGTGCTGTGGTGAGCCCACTTTAATTTGGATTATCTGCCAACTATTTGGGCAGTACATGCCTGCCGTTGCTGAA
AATGTAGTCAAGATAAACACTCTGGACATTGATAAACATGCAGGACAGCTCAAAGTCCTTAATCCATATCGACTGTGCAC
GATCGAATATCATCTGTTAACCCCACTTTGTTGATCGATCAGGTGAGGTTGAGGCGATCGGCACGGAGGCCAGGGCCTTG
TACAACCTAGGGCAGGCGGAGGGGCTGACCATCTGGTCTCCTAACGTGAACATCTACAGGGACCCAAGGTGGGGCCGTGG
CCAGGAGACGCCAGGCGAGGACCCCACCACGGCGAGCAAGTATGCCGTCGCCTTCGTTAAGGGATTGCAGGGGANNNNGN
CAGGGACTCTACAAACGTCCGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis