Browse Element(s) Details


OsAffx.7149.1.S1_at

Description tigr:9639.m01733
TID=OsAffx.7149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g187408/11hypothetical protein
LOC_Os11g243501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18700OsAffx.31811.5.S1_at11/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.3.S1_x_at6/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.1.S1_at2/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18710OsAffx.31045.1.S1_at11/1111+10576444..10578387hypothetical protein
LOC_Os11g18720NANA11+10578942..10582691retrotransposon protein, putative, unclassified
LOC_Os11g18730Os.27453.1.S1_at11/1111+10587515..10593743Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g18740OsAffx.7149.1.S1_at8/1111+10595759..10596947hypothetical protein
LOC_Os11g18740OsAffx.17242.1.S1_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18740Os.37711.3.S1_x_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18750OsAffx.18926.1.S1_x_at11/1111+10615324..10616193hypothetical protein
LOC_Os11g18750OsAffx.18926.1.S1_at11/1111+10615324..10616193hypothetical protein
LOC_Os11g18760NANA11+10620323..10620881hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7149.1.S1_at--476--10611Chr11:10595828..10595852 (25 bp)
TTCGGACCTCACTGCCGAACGCTGG
LOC_Os11g18740
OsAffx.7149.1.S1_at--257--3751Chr11:10595835..10595859 (25 bp)
CTCACTGCCGAACGCTGGGCAGTAC
LOC_Os11g18740
OsAffx.7149.1.S1_at--811--4552Chr11:10595911..10595935 (25 bp)
GCCCACGTCGGCGATATTGATAGAA
LOC_Os11g18740
OsAffx.7149.1.S1_at--1007--4172Chr11:10595912..10595936 (25 bp)
CCCACGTCGGCGATATTGATAGAAC
LOC_Os11g18740
OsAffx.7149.1.S1_at--515--291NONE
ATAGAACAAGCAAGTATGGCGTCAT
NONE
OsAffx.7149.1.S1_at--372--1431NONE
AGAACAAGCAAGTATGGCGTCATAT
NONE
OsAffx.7149.1.S1_at--502--2211NONE
ACAAGCAAGTATGGCGTCATATGAT
NONE
OsAffx.7149.1.S1_at--296--3231Chr11:10596862..10596883 (22 bp)
CAAGTATGGCGTCATATGATGTGGA
LOC_Os11g18740
OsAffx.7149.1.S1_at--655--8372Chr11:10596866..10596890 (25 bp)
GGCGTCATATGATGTGGAGGTATTC
LOC_Os11g18740
OsAffx.7149.1.S1_at--748--6252Chr11:10596876..10596900 (25 bp)
GATGTGGAGGTATTCATGCGAGTAA
LOC_Os11g18740
OsAffx.7149.1.S1_at--306--792Chr11:10596877..10596901 (25 bp)
ATGTGGAGGTATTCATGCGAGTAAA
LOC_Os11g18740
Target Sequence 
TTCGGACCTCACTGCCGAACGCTGGGCAGTACCTTAACCAGCAAGGAGGTGTTCACCTGGGCCAATACCAACAACCAGCG
GCTGCCCACGTCGGCGATATTGATAGAACAAGCAAGTATGGCGTCATATGATGTGGAGGTATTCATGCGAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis