Browse Element(s) Details


Os.53110.1.S1_at

Description gb:AK070860.1
DB_XREF= gi:32980883
TID=Os.53110.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067K03, full insert sequence.
FL= gb:AK070860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0145011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01410OsAffx.24049.1.S1_at10/112+247646..248321hypothetical protein
LOC_Os02g01420Os.47463.1.S1_x_at6/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01420Os.14491.2.S1_x_at5/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01430NANA2+255592..258924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01440Os.27378.1.A1_at5/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01440Os.50281.1.S1_at1/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01450Os.53110.1.S1_at11/112+265795..268839expressed protein
LOC_Os02g01460NANA2+269817..271352retrotransposon protein, putative, unclassified
LOC_Os02g01470NANA2+271926..273503retrotransposon protein, putative, unclassified
LOC_Os02g01480Os.50997.1.A1_x_at11/112+274455..277257expressed protein
LOC_Os02g01480Os.54334.1.S1_at10/112+274455..277257expressed protein
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53110.1.S1_at--229--2391Chr02:267622..267646 (25 bp)
AAACTGTCAATCTTGTGTCCAATGA
LOC_Os02g01450
Os.53110.1.S1_at--1133--2871Chr02:267907..267931 (25 bp)
AAGGGCGTGCCATTCAAAGTGAGCT
LOC_Os02g01450
Os.53110.1.S1_at--25--5951Chr02:268103..268127 (25 bp)
GAGCACATGCATCTGAGTTTCAATC
LOC_Os02g01450
Os.53110.1.S1_at--1157--3911Chr02:268471..268495 (25 bp)
CTGGCCTAGCCTCTCAGGTGAAGAA
LOC_Os02g01450
Os.53110.1.S1_at--511--1331Chr02:268503..268527 (25 bp)
AGAGTACTTAACAACACCCTCACGA
LOC_Os02g01450
Os.53110.1.S1_at--1008--5471Chr02:268535..268559 (25 bp)
GAACTATGGTGTCCCTATCTGACTG
LOC_Os02g01450
Os.53110.1.S1_at--536--3851Chr02:268553..268577 (25 bp)
CTGACTGTCGAAACGCAGCTTCATT
LOC_Os02g01450
Os.53110.1.S1_at--829--9871Chr02:268628..268652 (25 bp)
TACTTTATACTACTTGTCCGCGGAG
LOC_Os02g01450
Os.53110.1.S1_at--1052--311Chr02:268666..268690 (25 bp)
ATACGTTTTATCAGTCTTGGCGAGA
LOC_Os02g01450
Os.53110.1.S1_at--422--4951Chr02:268755..268779 (25 bp)
GCATTCTCTGTTGCATTGTCCATGA
LOC_Os02g01450
Os.53110.1.S1_at--129--9371Chr02:268800..268824 (25 bp)
TCGACCTTCCCTGCAATTAATCAAA
LOC_Os02g01450
Target Sequence 
AAACTGTCAATCTTGTGTCCAATGAAAGCCAAAAGTTGCTGGATAGAGCAGCAACTGCTGAAAAAAGATTTCAGAAAGGA
TGGAACACACTCAGGGAAGAAGGGCGTGCCATTCAAAGTGAGCTGAACCAAATAAGTGATATTGAGAAGCAAGCAGTAGG
TCTCAAGAGCATTCTCAATCAGCTTCCCAGAGCACATGCATCTGAGTTTCAATCAGAGATATCTGGCCTAGCCTCTCAGG
TGAAGAAGGAGAAGAGAGTACTTAACAACACCCTCACGAAGATTGNGAACTATGGTGTCCCTATCTGACTGTCGAAACGC
AGCTTCATTTNCTGTAGTTTTTATCAATGAAGAGATTCTGAAGACATGGGTGAATCTTTTACTTTATACTACTTGTCCGC
GGAGGGGAAAGGAAATAATACGTTTTATCAGTCTTGGCGAGATGTAAATTTGCCGCTGGTGCTGCAGCAGCAACATANCA
TTTTTGTAGTGTTTTGCATCATATGGGCATTCTCTGTTGCATTGTCCATGAAGTGAAATNGACATACTGCGTCGACCTTC
CCTGCAATTAATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis