Browse Element(s) Details


Os.53173.1.S1_at

Description gb:AK071191.1
DB_XREF= gi:32981214
TID=Os.53173.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084G11, full insert sequence.
FL= gb:AK071191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3778011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37740OsAffx.22711.4.A1_x_at5/115+22014949..22015620transposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.4.S1_x_at6/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.2.S1_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.3.S1_x_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_at3/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.20729.1.S1_x_at2/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_x_at1/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37770OsAffx.4550.1.S1_at11/115+22029092..22029677hypothetical protein
LOC_Os05g37780Os.53173.1.S1_at11/115+22039657..22040582expressed protein
LOC_Os05g37790OsAffx.14999.1.S1_at11/115+22047186..22047623hypothetical protein
LOC_Os05g37800Os.51914.1.A1_at11/115+22056861..22059120expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53173.1.S1_at--552--8731Chr05:22040117..22040141 (25 bp)
TGTACTGTAAGTTGGGTCGTTCGAC
LOC_Os05g37780
Os.53173.1.S1_at--948--7791Chr05:22040131..22040155 (25 bp)
GGTCGTTCGACGACGCGCAAGCAGA
LOC_Os05g37780
Os.53173.1.S1_at--360--5691Chr05:22040169..22040193 (25 bp)
GACTTGATCGGCTTGGGCATAGACG
LOC_Os05g37780
Os.53173.1.S1_at--157--10851Chr05:22040181..22040205 (25 bp)
TTGGGCATAGACGAAGGTGTATCCG
LOC_Os05g37780
Os.53173.1.S1_at--663--7471Chr05:22040445..22040469 (25 bp)
GTGTGTGTAAATCATGAGACTCAGA
LOC_Os05g37780
Os.53173.1.S1_at--1022--5931Chr05:22040460..22040484 (25 bp)
GAGACTCAGATCAGCGGAAGGCAGC
LOC_Os05g37780
Os.53173.1.S1_at--1126--5291Chr05:22040476..22040500 (25 bp)
GAAGGCAGCGGTAGACTCCAATCAT
LOC_Os05g37780
Os.53173.1.S1_at--37--5051Chr05:22040480..22040504 (25 bp)
GCAGCGGTAGACTCCAATCATTTGG
LOC_Os05g37780
Os.53173.1.S1_at--610--6951Chr05:22040516..22040540 (25 bp)
GTAGACAGGGATATGACAGGCAATT
LOC_Os05g37780
Os.53173.1.S1_at--897--5651Chr05:22040530..22040554 (25 bp)
GACAGGCAATTTGGACAGTAATGAT
LOC_Os05g37780
Os.53173.1.S1_at--438--9871Chr05:22040559..22040582 (24 bp)
TACATGTAATAACTTTACACGTCGC
LOC_Os05g37780
Target Sequence 
TGTACTGTAAGTTGGGTCGTTCGACGACGCGCAAGCAGAGGAGAAGTGGATGGACTTGATCGGCTTGGGCATAGACGAAG
GTGTATCCGTTGAAAGCATCGGTGAGGAAGCCAAACATGAACATGTGCTGGTGGCAAGGGAGAGCGGACGGTACAGGACT
CGCAGGAACGTTTACCTCGGTGTCATGGGATTGATCTGGGTTGGCCTGATGCAGACCACCGTGTTCGCGGCGCCCAACGT
GGAGTTGGACAAGTTTGCGGCCCTGTGTCTCATCTTTCTTGCCCATATTGTTCAGGTCTGCTTCAAGGAGGAAACTGATA
AGAAACAAGTGTGTGTAAATCATGAGACTCAGATCAGCGGAAGGCAGCGGTAGACTCCAATCATTTGGTTTGGTTTAAAG
TAGACAGGGATATGACAGGCAATTTGGACAGTAATGATATGTTACATGTAATAACTTTACACGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis