Browse Element(s) Details


Os.53189.1.S1_at

Description gb:AK071278.1
DB_XREF= gi:32981301
TID=Os.53189.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084C16, full insert sequence.
FL= gb:AK071278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07390OsAffx.16875.1.S1_x_at11/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07390Os.8936.1.S1_at10/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07400Os.22305.1.S1_at11/118+4147023..4150907Cullin family protein, expressed
LOC_Os08g07410NANA8+4153484..4156789retrotransposon protein, putative, unclassified
LOC_Os08g07420NANA8+4157400..4163555retrotransposon protein, putative, unclassified
LOC_Os08g07430Os.53189.1.S1_at11/118+4165918..4169212expressed protein
LOC_Os08g07440Os.25571.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07440Os.10323.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07450OsAffx.29079.1.S1_at11/118+4173245..4174195Glutaredoxin family protein
LOC_Os08g07460NANA8+4177780..4180707transposon protein, putative, unclassified
LOC_Os08g07470NANA8+4183160..4183896hypothetical protein
LOC_Os08g07480Os.54855.1.S1_at11/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07480OsAffx.29080.1.S1_x_at10/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53189.1.S1_at--1126--4891Chr08:4168535..4168647 (25 bp)
GCTTCCAGGCCACGGTAAAAGAGCT
LOC_Os08g07430
Os.53189.1.S1_at--836--1191Chr08:4168662..4168686 (25 bp)
AGTATGATGTACTTGCGCTGGCATT
LOC_Os08g07430
Os.53189.1.S1_at--368--9891Chr08:4168671..4168695 (25 bp)
TACTTGCGCTGGCATTGAACGGAAA
LOC_Os08g07430
Os.53189.1.S1_at--116--9931Chr08:4168704..4168728 (25 bp)
TACGGAGGCTCCAATTCGGTTGCAA
LOC_Os08g07430
Os.53189.1.S1_at--1002--131Chr08:4168762..4168786 (25 bp)
ATTACCGACGGGAACAGTGCAATAT
LOC_Os08g07430
Os.53189.1.S1_at--1020--1111Chr08:4168777..4168801 (25 bp)
AGTGCAATATACTTGGAGCACCCAA
LOC_Os08g07430
Os.53189.1.S1_at--810--851Chr08:4168818..4168842 (25 bp)
ATGGCTCACCTAAAACATCATCCAC
LOC_Os08g07430
Os.53189.1.S1_at--1121--6631Chr08:4168995..4169019 (25 bp)
GTTGTACCTGTGATGTTCTCTAATT
LOC_Os08g07430
Os.53189.1.S1_at--1035--3111Chr08:4169016..4169040 (25 bp)
AATTTTTTGTGTCTATTTATGCTCC
LOC_Os08g07430
Os.53189.1.S1_at--548--6931Chr08:4169167..4169191 (25 bp)
GTAGGAATACACAAATTTCTCCATA
LOC_Os08g07430
Os.53189.1.S1_at--833--191Chr08:4169181..4169205 (25 bp)
ATTTCTCCATACCATTGGGACCTAC
LOC_Os08g07430
Target Sequence 
GCTTCCAGGCCACGGTAAAAGAGCTATGGTTTGTAGAAGAGTATGATGTACTTGCGCTGGCATTGAACGGAAAGATGAAG
GTACGGAGGCTCCAATTCGGTTGCAAAGAAGGTCAAGGCAATGGAAAAATATAGAGAGAATTACCGACGGGAACAGTGCA
ATATACTTGGAGCACCCAAGGNTAATGTTGTTNGAATGGCTCACCTAAAACATCATCCACGCCGTCATTTGATCTGCCGA
GCTATACAATAGATGTGTTGGGCGACTGGGAATGCGACAAAGTGATGACAGATTGCAACNCATACTTGTGCAGAAAATCG
TATGCAACCATATGTATGTAATTTCTTTCGCNGTGNANGTATGCCACATTGNGTTGTACCTGTGATGTTCTCTAATTTTT
TGTGTCTATTTATGCTCCATTTTCTAGCATATGGAGACAGTGTACCAATAGAAACTCCAAAATTTGCTGTACATTTTTAG
GGGAAGAAAGGCCATTCAGGAAGACGAGTCTTCACTTTATATACAGAATTGTTATTCTTCAGGTGTAGGAATACACAAAT
TTCTCCATACCATTGGGACCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis