Browse Element(s) Details


Os.53190.1.S1_at

Description gb:AK071281.1
DB_XREF= gi:32981304
TID=Os.53190.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086E05, full insert sequence.
FL= gb:AK071281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4220011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed
LOC_Os07g42190OsAffx.5606.1.S1_at11/117+25249332..25251771hypothetical protein
LOC_Os07g42200Os.53190.1.S1_at11/117+25253371..25258266Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os07g42210Os.35344.18.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210Os.35344.3.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_at7/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_x_at5/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42220OsAffx.16682.1.S1_at11/117+25271689..25272287expressed protein
LOC_Os07g42234NANA7+25273996..25279369retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53190.1.S1_at--1138--4131Chr07:25257950..25257974 (25 bp)
CGCTGCTTGCCGGAACGAGGAGTTC
LOC_Os07g42200
Os.53190.1.S1_at--499--1211Chr07:25257970..25257994 (25 bp)
AGTTCTGGGTGTGGCACGTCCCCGC
LOC_Os07g42200
Os.53190.1.S1_at--409--4071Chr07:25258012..25258036 (25 bp)
CGAGTGACACGTGGCGCGTTGCATC
LOC_Os07g42200
Os.53190.1.S1_at--679--4631Chr07:25258027..25258051 (25 bp)
GCGTTGCATCGCACGCCATGTCAGC
LOC_Os07g42200
Os.53190.1.S1_at--1114--9071Chr07:25258060..25258084 (25 bp)
TGCTTTGCTCCACGTGTGCGACGAA
LOC_Os07g42200
Os.53190.1.S1_at--685--3991Chr07:25258072..25258096 (25 bp)
CGTGTGCGACGAACATTGTGTGTGT
LOC_Os07g42200
Os.53190.1.S1_at--451--6151Chr07:25258104..25258128 (25 bp)
GAGGTCTAGTAGTAACACTGGTGAT
LOC_Os07g42200
Os.53190.1.S1_at--593--10091Chr07:25258134..25258158 (25 bp)
TAGGATTTGCATGCATCCCTGTACT
LOC_Os07g42200
Os.53190.1.S1_at--1144--531Chr07:25258148..25258172 (25 bp)
ATCCCTGTACTCTGTTTGTTTCAGT
LOC_Os07g42200
Os.53190.1.S1_at--765--6011Chr07:25258185..25258209 (25 bp)
GAGAGAGCGATCAATTCATAATTCA
LOC_Os07g42200
Os.53190.1.S1_at--149--251Chr07:25258236..25258260 (25 bp)
ATATCTTATCAGGTCTCGTCTTCTT
LOC_Os07g42200
Target Sequence 
CGCTGCTTGCCGGAACGAGGAGTTCTGGGTGTGGCACGTCCCCGCCGACCACAAGGCGTGAGCGAGTGACACGTGGCGCG
TTGCATCGCACGCCATGTCAGCCGCCGCTTTGCTTTGCTCCACGTGTGCGACGAACATTGTGTGTGTGTGTGATGAGGTC
TAGTAGTAACACTGGTGATTTGATTAGGATTTGCATGCATCCCTGTACTCTGTTTGTTTCAGTGAGATGCAGAGTGAGAG
AGCGATCAATTCATAATTCANAGCACAACGAAGATCAGATCAGAAAATATCTTATCAGGTCTCGTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis