Browse Element(s) Details


Os.53198.1.S1_at

Description gb:AK071323.1
DB_XREF= gi:32981346
TID=Os.53198.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089I04, full insert sequence.
FL= gb:AK071323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1043410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10420OsAffx.7064.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.12740.1.S1_x_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S2_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_s_at10/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10430OsAffx.30915.1.S1_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10430OsAffx.30915.1.S1_x_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10434Os.53198.1.S1_at10/1111+5675569..5679503expressed protein
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10450NANA11+5689779..5691743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10460OsAffx.18781.1.S1_x_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed
LOC_Os11g10460Os.2427.1.S1_at11/1111+5695351..5697416Peroxidase 43 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53198.1.S1_at--904--10291NONE
TTTCCTTACACAACTCTGATCTCAA
NONE
Os.53198.1.S1_at--82--4171Chr11:5676112..5676136 (25 bp)
CGCCTCTCCTAGACAGCTTGAAAGA
LOC_Os11g10434
Os.53198.1.S1_at--518--2771Chr11:5676071..5676095 (25 bp)
AAGACCTGAAGAACTCTGCGCAAGA
LOC_Os11g10434
Os.53198.1.S1_at--373--6191Chr11:5675982..5676006 (25 bp)
GAGGAACCACATGCAACACTAAAGA
LOC_Os11g10434
Os.53198.1.S1_at--634--9191Chr11:5675946..5675970 (25 bp)
TCCAGTAGGTTGCAATTTCTCTCAG
LOC_Os11g10434
Os.53198.1.S1_at--805--10571Chr11:5675930..5675954 (25 bp)
TTCTCTCAGAGGATGTTGCGATGCT
LOC_Os11g10434
Os.53198.1.S1_at--1095--8251Chr11:5675808..5675832 (25 bp)
GGCAGAGTCTCTACTTGCATCGAAT
LOC_Os11g10434
Os.53198.1.S1_at--479--8831Chr11:5675720..5675744 (25 bp)
TGATTCGATTCCTTGATCCGGCAAC
LOC_Os11g10434
Os.53198.1.S1_at--308--10051Chr11:5675652..5675676 (25 bp)
TAGATCATAGAAGCCTTTCCTGCTC
LOC_Os11g10434
Os.53198.1.S1_at--673--4791Chr11:5675631..5675655 (25 bp)
GCTCCTGCTAGCTGTAACCGGTTTT
LOC_Os11g10434
Os.53198.1.S1_at--519--1731Chr11:5675615..5675639 (25 bp)
ACCGGTTTTGTATCTGTAACAGCAG
LOC_Os11g10434
Target Sequence 
TTTCCTTACACAACTCTGATCTCAAGTCCCAACGCCTCTCCTAGACAGCTTGAAAGAAAAATTGGACAACTCCAAGACCT
GAAGAACTCTGCGCAAGAAGTTTCATCAGATGACACACTTCAGATGTTTCATGAGAGCATTCTTCAGAGTAGCCATTCAT
TAGAGGAACCACATGCAACACTAAAGAGAGCTACAGATTCCAGTAGGTTGCAATTTCTCTCAGAGGATGTTGCGATGCTG
TGTTGCATGAATGCCCAGATATGAAAGAAAGTGGAGAATTGACATGAGATTCATAAACAGGTTGGCAGAATAGCAAGCAC
CACCAACCCTATTGCCGGCAGAGTCTCTACTTGCATCGAATTGCAGTTTGCTTAACATCAAGGGATTCAAGATGTTGATT
CAGGGGTGGTGTTGGAGATGGAAGTGATTCGATTCCTTGATCCGGCAACCCTGGTTTCCTGTTTCAAACTCAGAAATTCT
TAAGAATGTTTGTAGATCATAGAAGCCTTTCCTGCTCCTGCTAGCTGTAACCGGTTTTGTATCTGTAACAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis