Browse Element(s) Details


Os.53221.1.S1_at

Description gb:AK071440.1
DB_XREF= gi:32981463
TID=Os.53221.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091E23, full insert sequence.
FL= gb:AK071440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2013011/11MATH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19590NANA7+11599977..11602270hypothetical protein
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein
LOC_Os07g20130Os.53221.1.S1_at11/117+11625713..11626690MATH domain containing protein, expressed
LOC_Os07g20140OsAffx.16341.1.S1_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20140OsAffx.16341.1.S1_x_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20150OsAffx.16342.1.S1_at11/117+11630345..11634963expressed protein
LOC_Os07g20150Os.6134.1.S1_at7/117+11630345..11634963expressed protein
LOC_Os07g20160NANA7+11635585..11636241hypothetical protein
LOC_Os07g20170Os.46559.1.S1_at2/117+11641581..11644132Cofilin/tropomyosin-type actin-binding protein, expressed
LOC_Os07g20180OsAffx.28523.1.S1_at11/117+11645726..11646654hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53221.1.S1_at--947--1271Chr07:11626137..11626161 (25 bp)
AGATCATGCACACGTTCGGGAGCGC
LOC_Os07g20130
Os.53221.1.S1_at--47--2871Chr07:11626175..11626199 (25 bp)
AAGTGCGGGTTCAACTGGTTCATCA
LOC_Os07g20130
Os.53221.1.S1_at--945--411Chr07:11626256..11626280 (25 bp)
ATCATCCTCTGTTGCGACATCAAGG
LOC_Os07g20130
Os.53221.1.S1_at--910--7731Chr07:11626279..11626303 (25 bp)
GGTGGTGAACAAACCGGCCATCCAT
LOC_Os07g20130
Os.53221.1.S1_at--786--511Chr07:11626302..11626326 (25 bp)
ATCGCATTGGCCTGAACGACCTAGG
LOC_Os07g20130
Os.53221.1.S1_at--894--7411Chr07:11626328..11626352 (25 bp)
GTGTTTTGCCCCTGCGATGACGACA
LOC_Os07g20130
Os.53221.1.S1_at--224--4771Chr07:11626378..11626402 (25 bp)
GCTGCAGGCAGCGTCTGATATAGCT
LOC_Os07g20130
Os.53221.1.S1_at--893--3731Chr07:11626410..11626434 (25 bp)
CTCAGCCATGTCTCGGTATCAAGGG
LOC_Os07g20130
Os.53221.1.S1_at--537--2291Chr07:11626443..11626467 (25 bp)
AAAGGCTTTTCTCATACTTTCTAGC
LOC_Os07g20130
Os.53221.1.S1_at--298--2851Chr07:11626494..11626518 (25 bp)
AAGTCATGCCTTAGTACGTACGTAC
LOC_Os07g20130
Os.53221.1.S1_at--660--811Chr07:11626532..11626556 (25 bp)
ATGGTGTCCATGTTCGGCGAATCAA
LOC_Os07g20130
Target Sequence 
AGATCATGCACACGTTCGGGAGCGCGCGCCGCAACAGCAAGTGCGGGTTCAACTGGTTCATCAGCAGGGACGAGATGGAG
ACGCTGCAGAACAAGTATGTCGGGGAGGATGACGACTCCATCATCCTCTGTTGCGACATCAAGGTGGTGAACAAACCGGC
CATCCATCGCATTGGCCTGAACGACCTAGGGGTGTTTTGCCCCTGCGATGACGACACCTGCAAGCGCCTCCACAAGAGGT
CGCTGCAGGCAGCGTCTGATATAGCTATGGAGTCTCAGCCATGTCTCGGTATCAAGGGGGGGTTCAAAAGGCTTTTCTCA
TACTTTCTAGCCTAATTAGCACAGTTTAATTTGTTCCAAGTCATGCCTTAGTACGTACGTACATCTTGATAACGCATGGT
GTCCATGTTCGGCGAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis