Browse Element(s) Details


OsAffx.16340.1.S1_at

Description tigr:9635.m01982
TID=OsAffx.16340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2012011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19570OsAffx.5380.1.S1_at11/117+11596133..11596492hypothetical protein
LOC_Os07g19580NANA7+11597581..11599458retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19590NANA7+11599977..11602270hypothetical protein
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein
LOC_Os07g20130Os.53221.1.S1_at11/117+11625713..11626690MATH domain containing protein, expressed
LOC_Os07g20140OsAffx.16341.1.S1_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20140OsAffx.16341.1.S1_x_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20150OsAffx.16342.1.S1_at11/117+11630345..11634963expressed protein
LOC_Os07g20150Os.6134.1.S1_at7/117+11630345..11634963expressed protein
LOC_Os07g20160NANA7+11635585..11636241hypothetical protein
LOC_Os07g20170Os.46559.1.S1_at2/117+11641581..11644132Cofilin/tropomyosin-type actin-binding protein, expressed
LOC_Os07g20180OsAffx.28523.1.S1_at11/117+11645726..11646654hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16340.1.S1_at--1060--5111Chr07:11621369..11621393 (25 bp)
GCACATAGGCTCTTCCATCGTGTCA
LOC_Os07g20120
OsAffx.16340.1.S1_at--1069--271Chr07:11621373..11621397 (25 bp)
ATAGGCTCTTCCATCGTGTCAGCTT
LOC_Os07g20120
OsAffx.16340.1.S1_at--272--4331Chr07:11621383..11621407 (25 bp)
CCATCGTGTCAGCTTCATGGAGACG
LOC_Os07g20120
OsAffx.16340.1.S1_at--1040--8531Chr07:11621400..11621424 (25 bp)
TGGAGACGACCATGGTGCACATGTT
LOC_Os07g20120
OsAffx.16340.1.S1_at--144--5791Chr07:11621404..11621428 (25 bp)
GACGACCATGGTGCACATGTTCGAC
LOC_Os07g20120
OsAffx.16340.1.S1_at--16--811Chr07:11621411..11621435 (25 bp)
ATGGTGCACATGTTCGACCGCAACG
LOC_Os07g20120
OsAffx.16340.1.S1_at--490--9031Chr07:11621415..11621439 (25 bp)
TGCACATGTTCGACCGCAACGATGA
LOC_Os07g20120
OsAffx.16340.1.S1_at--267--711Chr07:11621420..11621444 (25 bp)
ATGTTCGACCGCAACGATGACATGC
LOC_Os07g20120
OsAffx.16340.1.S1_at--501--9371Chr07:11621424..11621448 (25 bp)
TCGACCGCAACGATGACATGCCGAT
LOC_Os07g20120
OsAffx.16340.1.S1_at--889--671Chr07:11621436..11621460 (25 bp)
ATGACATGCCGATCCCCAAGGAGGA
LOC_Os07g20120
OsAffx.16340.1.S1_at--794--3951Chr07:11621518..11621542 (25 bp)
CGTGAATGTGGATGTCGACTCGTCC
LOC_Os07g20120
Target Sequence 
GCACATAGGCTCTTCCATCGTGTCAGCTTCATGGAGACGACCATGGTGCACATGTTCGACCGCAACGATGACATGCCGAT
CCCCAAGGAGGAGCATGTCGCCTCCTCCCCGTCCCAGGGGAAGCCCGCGGAGGAGGAGGAAGAAGAGTTCGTGAATGTGG
ATGTCGACTCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis