Browse Element(s) Details


Os.53272.1.S1_at

Description gb:AK071700.1
DB_XREF= gi:32981723
TID=Os.53272.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108H08, full insert sequence.
FL= gb:AK071700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1289011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12860NANA8+7619859..7621711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.47463.1.S1_x_at6/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.14491.2.S1_x_at5/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12880Os.26886.3.S1_x_at6/118+7637210..7639960transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12890Os.53272.1.S1_at11/118+7646288..7658069expressed protein
LOC_Os08g12890OsAffx.21285.1.S1_at1/118+7646288..7658069expressed protein
LOC_Os08g12890Os.48033.1.S1_at1/118+7646288..7658069expressed protein
LOC_Os08g12900OsAffx.20187.1.S1_at3/118+7662786..7667572retrotransposon protein, putative, unclassified
LOC_Os08g12900OsAffx.17344.1.S1_at2/118+7662786..7667572retrotransposon protein, putative, unclassified
LOC_Os08g12910NANA8+7669475..7672457retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12920NANA8+7673067..7679314transposon protein, putative, unclassified
LOC_Os08g12930OsAffx.5797.1.S1_at11/118+7680863..7681344hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53272.1.S1_at--176--5672Chr08:7657152..7657172 (21 bp)
GACATCGGTTGACATCAGCTACCAC
LOC_Os08g12890
Os.53272.1.S1_at--20--2351Chr08:7657542..7657566 (25 bp)
AAAGAGCTCTTGCAGAGGCCTTGCT
LOC_Os08g12890
Os.53272.1.S1_at--953--6851Chr08:7657598..7657622 (25 bp)
GTTTGCAAGGAAGTTCTACCCAGAA
LOC_Os08g12890
Os.53272.1.S1_at--429--1491Chr08:7657701..7657725 (25 bp)
AGCACTTGGTGCTTCAAAATTCTTT
LOC_Os08g12890
Os.53272.1.S1_at--325--2451Chr08:7657716..7657740 (25 bp)
AAAATTCTTTTGTACATCGCGGGAG
LOC_Os08g12890
Os.53272.1.S1_at--291--10531Chr08:7657865..7657889 (25 bp)
TTCAGGGTTCTTTGTCTTCCTACAA
LOC_Os08g12890
Os.53272.1.S1_at--1050--9831Chr08:7657885..7657909 (25 bp)
TACAAACGTTGTTCATTCTGGCAAA
LOC_Os08g12890
Os.53272.1.S1_at--1092--8231Chr08:7657904..7657928 (25 bp)
GGCAAATTTTGCCACTATCAGTTTT
LOC_Os08g12890
Os.53272.1.S1_at--239--411Chr08:7657920..7657944 (25 bp)
ATCAGTTTTCTCTTATAGCCCAGTT
LOC_Os08g12890
Os.53272.1.S1_at--1021--5211Chr08:7657948..7657972 (25 bp)
GAATTTTGCCACTTATCCATGCACA
LOC_Os08g12890
Os.53272.1.S1_at--614--8771Chr08:7657998..7658022 (25 bp)
TGTATTCTCTATTCATCCTGTATGC
LOC_Os08g12890
Target Sequence 
GACATCGGTTGACATCAGCTACCACATAACAAGTGATGAAAAGAAAGAGCTCTTGCAGAGGCCTTGCTTGTGGAATGGAC
TAAAGAGACCATGCTACTTGTTTGCAAGGAAGTTCTACCCAGAAACTTTGAACAATCTCATGTACTTATTCTCTAACTAC
ACCATTTTCTAAGCTCTAACGGGAAAATCCTCACATATTGGAAGCACTTGGTGCTTCAAAATTCTTTTGTACATCGCGGG
AGAAGCAAATTTATTTACACTAATTGGGTATAGAAATAGGGGAAGTATTGGATTCTACTGCAGCAATATTAGGGTATTGT
GGCCATGGGTATAGTTTAGGATTATATTATTTAAATTTCTTAGTTTTTCAGGGTTCTTTGTCTTCCTACAAACGTTGTTC
ATTCTGGCAAATTTTGCCACTATCAGTTTTCTCTTATAGCCCAGTTATAGAATTTTGCCACTTATCCATGCACAAAAAAT
GTGTGTAAATGGAATTCTATGTATTCTCTATTCATCCTGTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis