Browse Element(s) Details


Os.53284.1.S1_at

Description gb:AK071783.1
DB_XREF= gi:32981806
TID=Os.53284.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110G02, full insert sequence.
FL= gb:AK071783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2322011/11myosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23200NANA11+12874002..12878337retrotransposon, putative, centromere-specific
LOC_Os11g23210Os.49364.1.A1_x_at2/1111+12881165..12883525hypothetical protein
LOC_Os11g23210OsAffx.5382.1.S1_at1/1111+12881165..12883525hypothetical protein
LOC_Os11g23220Os.53284.1.S1_at11/1111+12897581..12899132myosin family protein, putative, expressed
LOC_Os11g23230NANA11+12903184..12906156retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23736OsAffx.18275.1.S1_x_at1/1111+12911611..12915105retrotransposon protein, putative, unclassified, expressed
LOC_Os11g23736Os.15833.1.S1_at1/1111+12911611..12915105retrotransposon protein, putative, unclassified, expressed
LOC_Os11g23740NANA11+12918543..12919010retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0009504cellular_componentcell plate
GO:0009524cellular_componentphragmoplast
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53284.1.S1_at--990--2031Chr11:12898148..12898172 (25 bp)
ACTATCAGGCACTAGTGGTGCTCCT
LOC_Os11g23220
Os.53284.1.S1_at--216--951Chr11:12898098..12898122 (25 bp)
AGGAAGCATCGGTGACGCGGCAACA
LOC_Os11g23220
Os.53284.1.S1_at--532--9431Chr11:12898070..12898094 (25 bp)
TCGTGGCCGCGAATCGAACGTTGCT
LOC_Os11g23220
Os.53284.1.S1_at--535--5451Chr11:12898055..12898079 (25 bp)
GAACGTTGCTGCAGTCGTCGACGAA
LOC_Os11g23220
Os.53284.1.S1_at--766--931Chr11:12898030..12898054 (25 bp)
AGGAAAACCGATGCCGTGAGCCGCT
LOC_Os11g23220
Os.53284.1.S1_at--346--7571Chr11:12897864..12897888 (25 bp)
GGGCCCGTCTGCGTAAGACCAAGGC
LOC_Os11g23220
Os.53284.1.S1_at--958--4791Chr11:12897780..12897804 (25 bp)
GCTCGTGGAAGATCAAGCTGCCGAA
LOC_Os11g23220
Os.53284.1.S1_at--902--9171Chr11:12897762..12897786 (25 bp)
TGCCGAAGTGCAGGTTTCCCAAGTG
LOC_Os11g23220
Os.53284.1.S1_at--366--7871Chr11:12897750..12897774 (25 bp)
GGTTTCCCAAGTGCTGCGCGTTCAA
LOC_Os11g23220
Os.53284.1.S1_at--652--1251Chr11:12897663..12897687 (25 bp)
AGATTGCAGACGCTTGGTTTGCTTC
LOC_Os11g23220
Os.53284.1.S1_at--20--8591Chr11:12897649..12897673 (25 bp)
TGGTTTGCTTCTTCTACTTGTACAT
LOC_Os11g23220
Target Sequence 
ACTATCAGGCACTAGTGGTGCTCCTGCTCAGTCGTCAGGGTGGCGAGAGGAGGAAGCATCGGTGACGCGGCAACAGGCTC
GTGGCCGCGAATCGAACGTTGCTGCAGTCGTCGACGAAAGGAAAACCGATGCCGTGAGCCGCTTGGCCACGGAGCTCCGG
CAGGAGAGCGAGGCGTTCGAGCACCGCGCGCGTGCGGTGACCGAAGCGGGACCGCCGACTGCCAAGTCGGTCGACGAGCT
CAAGAAGCTGAAGCGGCAGTTCGGGACGTGGAAGAAGGAATACGGGGCCCGTCTGCGTAAGACCAAGGCCGAGCTGAAGA
AGCTCGTCCGCTCGGAGAGGGGTGGCCACGGGAACCGCCGCAGGTGCTGCTCGTGGAAGATCAAGCTGCCGAAGTGCAGG
TTTCCCAAGTGCTGCGCGTTCAAGCTTCCAAGCCCTTCCTCTTGCTGTTCCTGCAGTTGCTTCCGCCGCTGCTGCTAGCC
ACGCAAGATTGCAGACGCTTGGTTTGCTTCTTCTACTTGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis