Browse Element(s) Details


Os.49364.1.A1_x_at

Description gb:AK062975.1
DB_XREF= gi:32972993
TID=Os.49364.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E09, full insert sequence.
FL= gb:AK062975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g232102/11hypothetical protein
LOC_Os06g230401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23170Os.18880.1.S1_at3/1111+12853173..12861291Mitochondrial carrier protein, expressed
LOC_Os11g23180OsAffx.18974.1.S1_at11/1111+12865611..12866706hypothetical protein
LOC_Os11g23190OsAffx.18975.1.S1_at11/1111+12870036..12872507hypothetical protein
LOC_Os11g23200NANA11+12874002..12878337retrotransposon, putative, centromere-specific
LOC_Os11g23210Os.49364.1.A1_x_at2/1111+12881165..12883525hypothetical protein
LOC_Os11g23210OsAffx.5382.1.S1_at1/1111+12881165..12883525hypothetical protein
LOC_Os11g23220Os.53284.1.S1_at11/1111+12897581..12899132myosin family protein, putative, expressed
LOC_Os11g23230NANA11+12903184..12906156retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49364.1.A1_x_at--1117--7731Chr02:13605635..13605659 (25 bp)
GGTGTGAACCACTCACACTGTGTTC
NONE
Os.49364.1.A1_x_at--489--2651Chr02:13605629..13605653 (25 bp)
AACCACTCACACTGTGTTCTTGGTG
NONE
Os.49364.1.A1_x_at--969--9691Chr02:13605623..13605647 (25 bp)
TCACACTGTGTTCTTGGTGTTTGGG
NONE
Os.49364.1.A1_x_at--824--3611Chr02:13605580..13605604 (25 bp)
CTTGGTGGGCTAAGAGCACGGTGCA
NONE
Os.49364.1.A1_x_at--393--7571Chr02:13605536..13605560 (25 bp)
GGGCCCTCGGCTTGAAGGCCGTCAT
NONE
Os.49364.1.A1_x_at--75--7131Chr02:13605516..13605540 (25 bp)
GTCATCCACCCACGGCTGGGTTGGT
NONE
Os.49364.1.A1_x_at--111--3351Chr02:13605486..13605510 (25 bp)
CACGGTCAGTGCACGGCGCGGCACT
NONE
Os.49364.1.A1_x_at--320--8071Chr02:13605246..13605270 (25 bp)
GGAGCAAAGACATACTTGTGCTGGG
NONE
Os.49364.1.A1_x_at--77--5291Chr02:13605185..13605209 (25 bp)
GAATGGGGACTCTCTGTATTTGTAA
NONE
Os.49364.1.A1_x_at--693--8133Chr06:13440898..13440950 (25 bp)
GGACATTTGATTTGGCTCTGGATTG
LOC_Os06g23040
Os.49364.1.A1_x_at--609--10232Chr11:12881869..12881888 (20 bp)
TTTGATTTGGCTCTGGATTGTCACT
LOC_Os11g23210
Target Sequence 
GGTGTGAACCACTCACACTGTGTTCTTGGTGTTTGGGGAAGAGATTTGGGAGGTGCTTGGTGGGCTAAGAGCACGGTGCA
GGAGGGAGGCCGTCGTGCGGGGCCCTCGGCTTGAAGGCCGTCATCCACCCACGGCTGGGTTGGTAGGGGCACGGTCAGTG
CACGGCGCGGCACTGAGCGCGGTGCGGTGCGNNTCGGTGCAGGAGNGCGGTGNGGCGCACGCAAGGAGGAGCGGCGNGGC
NCGGCACGGTGGCTCGGTGACCCGGTGCGCCAGCCTCGCCCGACTCGGCATTTTGCCGAGCACGTGGCGGGCGGNGTNTC
ANCCTGCTGGCTGAGGCAAGGAAGGAGGGGGAGTANACTTGGCTNCAAGAGAGAGGGAGAGCTGGTNAGGGAGCAAAGAC
ATACTTGTGCTGGGGGGTGAGTTGGNCTGNCNGGAAAAGAAGNCCCANCAGAATGGGGACTCTCTGTATTTGTAANGGNA
TTGGAATTGGGAAGANTTTTGTNTTTGGAATTTGTAGATGANCTGTATATTGGTANCTNGANNGNGAATTTGTAATNGGN
CTATATAATNGGACATTTGATTTGGCTCTGGATTGTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49364.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis