Browse Element(s) Details


OsAffx.18974.1.S1_at

Description tigr:9639.m02075
TID=OsAffx.18974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2318011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23140OsAffx.20387.1.S1_x_at2/1111+12834086..12840766retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23150NANA11+12843648..12844511hypothetical protein
LOC_Os11g23160NANA11+12845325..12847412hypothetical protein
LOC_Os11g23170Os.18880.1.S1_at3/1111+12853173..12861291Mitochondrial carrier protein, expressed
LOC_Os11g23180OsAffx.18974.1.S1_at11/1111+12865611..12866706hypothetical protein
LOC_Os11g23190OsAffx.18975.1.S1_at11/1111+12870036..12872507hypothetical protein
LOC_Os11g23200NANA11+12874002..12878337retrotransposon, putative, centromere-specific
LOC_Os11g23210Os.49364.1.A1_x_at2/1111+12881165..12883525hypothetical protein
LOC_Os11g23210OsAffx.5382.1.S1_at1/1111+12881165..12883525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18974.1.S1_at--261--10311Chr11:12866129..12866153 (25 bp)
TTTCTGGTGCTGGTGACACAGGCAA
LOC_Os11g23180
OsAffx.18974.1.S1_at--965--8091Chr11:12866164..12866188 (25 bp)
GGACCTGCACCCTATTGGAGTGTTA
LOC_Os11g23180
OsAffx.18974.1.S1_at--178--9671Chr11:12866215..12866239 (25 bp)
TCAGCCCTGCCTCCAAAGAAAAGGT
LOC_Os11g23180
OsAffx.18974.1.S1_at--74--9211Chr11:12866291..12866315 (25 bp)
TGCCAGTTGCAGTTCCAGCTCAGAT
LOC_Os11g23180
OsAffx.18974.1.S1_at--207--1231Chr11:12866312..12866336 (25 bp)
AGATCCCCTTGGCAGGGTCTAACAG
LOC_Os11g23180
OsAffx.18974.1.S1_at--694--9791Chr11:12866361..12866385 (25 bp)
TAAGCAGGACAACTCACTAGGCCCA
LOC_Os11g23180
OsAffx.18974.1.S1_at--587--5391Chr11:12866479..12866503 (25 bp)
GAAGCAGGCAATTCCATTGCTGGGA
LOC_Os11g23180
OsAffx.18974.1.S1_at--507--1311Chr11:12866561..12866585 (25 bp)
AGATGTCCAACAGCTTACCTTCAGA
LOC_Os11g23180
OsAffx.18974.1.S1_at--1109--2631Chr11:12866599..12866623 (25 bp)
AACCTTGGCGCTAGCAGCGAGAGCA
LOC_Os11g23180
OsAffx.18974.1.S1_at--277--8951Chr11:12866624..12866648 (25 bp)
TGACTGCAACTGTGGATTGCCCAGC
LOC_Os11g23180
OsAffx.18974.1.S1_at--238--4291Chr11:12866652..12866676 (25 bp)
CCTGCCTGCATCTTCATTGGGAAGT
LOC_Os11g23180
Target Sequence 
TTTCTGGTGCTGGTGACACAGGCAAGGGGTTGCCAGGACCTGCACCCTATTGGAGTGTTAACTCTTCATATGAGTCTATC
CCAATCTCAGCCCTGCCTCCAAAGAAAAGGTATTTGCGACAACTACAGTTAGCTCAACAACTAGAGGTCAGCCCCCCTGC
TGTGCCAGTTGCAGTTCCAGCTCAGATCCCCTTGGCAGGGTCTAACAGTGGTGTAAGCTTTGGGCAGAAGAGTAAGCAGG
ACAACTCACTAGGCCCAATAAATTGGAGATCAACAAGATGGTGGAATTATCGCAAGAGATCATCAGATGATGCTGATAAT
GCAGAGAAAAAGGATGCAGCAAATTACCAGGAAGCAGGCAATTCCATTGCTGGGAAAAGGAATCGAGTGGAATGGGGCTA
TGGACTAGCAAAGTATGAGAAAGAGAAGAAGCAGATGTCCAACAGCTTACCTTCAGATGGGGACAATACCAACCTTGGCG
CTAGCAGCGAGAGCATGACTGCAACTGTGGATTGCCCAGCCGCCCTGCCTGCATCTTCATTGGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis