Browse Element(s) Details


Os.18880.1.S1_at

Description gb:AK064691.1
DB_XREF= gi:32974709
TID=Os.18880.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E10, full insert sequence.
FL= gb:AK064691.1 gb:AK065787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g231703/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23120Os.23706.1.A1_x_at1/1111+12826980..12828978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23130OsAffx.13882.2.S1_at2/1111+12829596..12831552retrotransposon protein, putative, unclassified
LOC_Os11g23130OsAffx.25917.1.S1_at1/1111+12829596..12831552retrotransposon protein, putative, unclassified
LOC_Os11g23130OsAffx.12179.1.S1_x_at1/1111+12829596..12831552retrotransposon protein, putative, unclassified
LOC_Os11g23140OsAffx.20387.1.S1_x_at2/1111+12834086..12840766retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23150NANA11+12843648..12844511hypothetical protein
LOC_Os11g23160NANA11+12845325..12847412hypothetical protein
LOC_Os11g23170Os.18880.1.S1_at3/1111+12853173..12861291Mitochondrial carrier protein, expressed
LOC_Os11g23180OsAffx.18974.1.S1_at11/1111+12865611..12866706hypothetical protein
LOC_Os11g23190OsAffx.18975.1.S1_at11/1111+12870036..12872507hypothetical protein
LOC_Os11g23200NANA11+12874002..12878337retrotransposon, putative, centromere-specific
LOC_Os11g23210Os.49364.1.A1_x_at2/1111+12881165..12883525hypothetical protein
LOC_Os11g23210OsAffx.5382.1.S1_at1/1111+12881165..12883525hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005476molecular_functioncarnitine:acyl carnitine antiporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18880.1.S1_at--1066--10831Chr11:12861181..12861205 (25 bp)
TTGGTACCTTAACTCTTCTTCACCG
LOC_Os11g23170
Os.18880.1.S1_at--48--10291Chr11:12861215..12861239 (25 bp)
TTTGCCCCTCAACTATAACTATTCA
LOC_Os11g23170
Os.18880.1.S1_at--731--351Chr11:12861250..12861274 (25 bp)
ATAATGTCCCCAGACTGGTTCTGTG
LOC_Os11g23170
Os.18880.1.S1_at--555--8571Chr11:12861373..12861397 (25 bp)
TGGATAATCTAGTTGGTCCCATCAC
NONE
Os.18880.1.S1_at--213--7251Chr11:12861388..12861412 (25 bp)
GTCCCATCACTTCCTTTTATTTCTT
NONE
Os.18880.1.S1_at--619--8831Chr11:12861418..12861442 (25 bp)
TGATTTGTTTTCCATGTCGGCATCC
NONE
Os.18880.1.S1_at--945--7271Chr11:12861480..12861504 (25 bp)
GTGCGCAAGGACGTCATTTCAGTTT
NONE
Os.18880.1.S1_at--802--8051Chr11:12861639..12861663 (25 bp)
GGAGAGGCTTCTTAGCTTATCCCGT
NONE
Os.18880.1.S1_at--723--1551Chr11:12861652..12861676 (25 bp)
AGCTTATCCCGTTTGATTGCATCAA
NONE
Os.18880.1.S1_at--173--2311Chr11:12861683..12861707 (25 bp)
AAATGGCTGTGACTGCATCAATGGA
NONE
Os.18880.1.S1_at--692--7991Chr11:12861705..12861729 (25 bp)
GGATGTTGCAAATTGTACCCTGTCA
NONE
Target Sequence 
TTGGTACCTTAACTCTTCTTCACCGTGGTCAACTTTTGCCCCTCAACTATAACTATTCAAACCATCTAAATAATGTCCCC
AGACTGGTTCTGTGGATACTTTTTGAGTGNCATGGCTGCCACATCTTGACCCCACACTTCATGTCCTCTTGTCTTTAAAT
TAAATGNGGTTGGAGAGGAATATGAACANAAGGTGGATAATCTAGTTGGTCCCATCACTTCCTTTTATTTCTTTTCCTTG
ATTTGTTTTCCATGTCGGCATCCAATTAGGAAATCATCTAGGACAGTACAACCTAGGTACGTGCGCAAGGACGTCATTTC
AGTTTTGACTGTAGAGGAATTAGTTCTGGAAGAGTTCAGAAAGACTAAATAGACCTTTGTCCTGTTCATAGAGAGGTTTC
GTTAAAATTCAGTGTATNTGTAAAACTCAGCGGTACATTTTTAATTGTAAACTCAGTTGGGGAGAGGCTTCTTAGCTTAT
CCCGTTTGATTGCATCAAACGAGGAAATGGCTGTGACTGCATCAATGGATGTTGCAAATTGTACCCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis