Browse Element(s) Details


Os.53290.1.S1_at

Description gb:AK072310.1
DB_XREF= gi:32982333
TID=Os.53290.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024E16, full insert sequence.
FL= gb:AK071817.1 gb:AK072310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0465011/11pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g515901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04620Os.27768.1.S1_at11/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04620Os.34006.1.S1_x_at1/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04630Os.34139.1.S1_at6/118+2304024..2308749EF hand family protein, expressed
LOC_Os08g04640OsAffx.29032.1.S1_at11/118+2314093..2314650expressed protein
LOC_Os08g04650Os.53290.1.S1_at11/118+2316203..2317294pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g04660OsAffx.16828.1.S1_at11/118+2323968..2324393hypothetical protein
LOC_Os08g04670OsAffx.5705.1.S1_at11/118+2325991..2326566expressed protein
LOC_Os08g04680OsAffx.29033.1.S1_at4/118+2329913..2330820hypothetical protein
LOC_Os08g04690NANA8+2332315..2333011expressed protein
LOC_Os08g04700OsAffx.29034.1.S1_at11/118+2335365..2335901hypothetical protein
LOC_Os08g04710OsAffx.29035.1.S1_at11/118+2337777..2338343hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53290.1.S1_at--279--8111Chr08:2316757..2316781 (25 bp)
GGAACACGACGTCGGTGTACGCCAC
LOC_Os08g04650
Os.53290.1.S1_at--334--4411Chr08:2316737..2316761 (25 bp)
GCCACGGCCATCACCAATCGGGATT
LOC_Os08g04650
Os.53290.1.S1_at--97--3191Chr08:2316723..2316747 (25 bp)
CAATCGGGATTGGACCGTGCTCGTT
LOC_Os08g04650
Os.53290.1.S1_at--709--9931Chr08:2316687..2316711 (25 bp)
TACGTTGGTTGTGCCGCGCCAGCAA
LOC_Os08g04650
Os.53290.1.S1_at--360--1491Chr08:2316667..2316691 (25 bp)
AGCAACTCAGCTAGTTCTGCCATGC
LOC_Os08g04650
Os.53290.1.S1_at--1023--9191Chr08:2316650..2316674 (25 bp)
TGCCATGCATCACCAATCGTGCGAT
LOC_Os08g04650
Os.53290.1.S1_at--708--3051Chr08:2316636..2316660 (25 bp)
AATCGTGCGATTGGATTGCTGGTCG
LOC_Os08g04650
Os.53290.1.S1_at--121--10811Chr08:2316604..2316628 (25 bp)
TTGTCCTTCCTCGTTCTAAGGCCGT
LOC_Os08g04650
Os.53290.1.S1_at--406--2471Chr08:2316459..2316483 (25 bp)
AACACACCCTAAATATGGCTGATAT
LOC_Os08g04650
Os.53290.1.S1_at--201--1891Chr08:2316382..2316406 (25 bp)
ACGTTGAGACCATATGTATAGACCA
LOC_Os08g04650
Os.53290.1.S1_at--1093--105112Chr12:7426373..7426397 (25 bp)
TTCACTATGAGAATTCGCTTGGATA
NONE
Target Sequence 
GGAACACGACGTCGGTGTACGCCACGGCCATCACCAATCGGGATTGGACCGTGCTCGTTCTGCGCCTCGCTACGTTGGTT
GTGCCGCGCCAGCAACTCAGCTAGTTCTGCCATGCATCACCAATCGTGCGATTGGATTGCTGGTCGCCCTCCCTTGTCCT
TCCTCGTTCTAAGGCCGTGTTTTGTTTCCCTCNTATTCCCAACTTTNCATCACATCAAAANCTTTCCTACACTCATAAAC
TTTCAACTTTTTTTCCAAACTCCCATTTCTTTAAACTTNNAANTTTTTTNAGGAACTAAACACACCCTAAATATGGCTGA
TATCAAGCNTTAAAAACTTTAGCTATGAATAAATTTTAAAATACTTACGTTAGAAACGTTGAGACCATATGTATAGACCA
AATTTTTAATATATTTGTTGATGTTTTTTATATATTATATTNTACTAGAAAAGATGCCNGTGTGTTGCAACGGGTGAAGC
TATTTTAATCTTATTGTTGTTCAATNTGATTCACTATGAGAATTCGCTTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis